<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16133

Description Uncharacterized protein
SequenceMPSELKLAREQLQRGDGQIMQPDAPATCQVPDSVTVSSVEAPSITSSAISDVSSPVPVVPVPAVFTPLQAVGSISTVDVKIQSPVSVVTPLSVNVSEKAEATTALMTTAATMSVIDDVSPQKVANSVDETSLQDLEEAKNTMAAAGKTNVTVLEEKTVEAELISYANKQDAKDAFKALLESANVESDWSWEQAMRVIINDKRYGALKSLSERKQVFNEYLGQRKKQEAEDRRTKQKQAREDFIKMLEDSDVLTSTTKWSKAITIFEDDERFKAVERVRDREDIFESYITELQKKERAKAHEENKRNIREYKQFLQSCDFIKANSQWRKVQERLEQDERCSRLEKIDRLKIFQEYLNDLEKEEEEQKKIEKEQLRRAERNNRDEFRKLMEGHVAAGVLTAKTHWREYHEKVKDLPAYVAASSNTSGATPKVLFEDVAEELEKQYYDDKIRIKDAIKFKKITMASTWTIDDLKVAVSEELSSSPISDINFKLAFDELLERVKEKEEKEVKKRNNLADNFSQFLYSIKEINSTSTWDECKALIEDSQEYRSIGEESFKREIFEEYITHLLEKAKEKERKRSEEKAKKEKERGERERRKEKERKEKDREHGRDRGEERSKKIETESGDVDVKEARKREKERDRKHRKRRQNEGDEVSSDKEENEESKKSRRHRSDGKKSRKHVNSNESDSEGRHKRHRREHRHGSRRNGDLEDGELGEDGEIR
Length719
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.05
Grand average of hydropathy-1.129
Instability index55.16
Isoelectric point6.04
Molecular weight83431.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16133
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.08|      26|      26|     652|     677|       1
---------------------------------------------------------------------------
  587-  616 (30.74/11.34)	E...RGE...RErrkEKERKEKDREHgRDRGEE.RSK
  618-  650 (22.85/ 6.44)	IeteSGDvdvKE..aRKREKERDRKH.RKRRQN.EGD
  652-  677 (42.32/18.52)	V...SSD...KE...ENEESKKSRRH.RSDGKK.SRK
  679-  703 (30.17/10.98)	V...NSN...ES...DSEG..RHKRH.RREHRHgSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     420.58|      66|      66|     175|     240|       2
---------------------------------------------------------------------------
  175-  240 (98.90/47.11)	FKALLE...SAN.V.ESDWSWEQAMRVIINDKRYGALKSL...SERKQ..................VFNEYLGQ.RKK.QEAEDR.RTKQKQARE
  242-  309 (81.18/37.44)	FIKMLE...DSD.VlTSTTKWSKAITIFEDDERFKAVERV...RDRED..................IFESYITElQKK.ERAKAH.EENKRNIRE
  310-  375 (84.29/39.14)	YKQFLQ...SCDfI.KANSQWRKVQERLEQDERCSRLEKI....DRLK..................IFQEYLND.LEK.EEEEQK.KIEKEQLRR
  384-  452 (54.34/22.80)	FRKLMEghvAAG.VlTAKTHWREYHEKVKDLPAYVAASSNtsgATPKV..................LFEDVAEE.LEK.QYYDDKiRIKD.....
  456-  506 (53.96/22.59)	....FK...KIT.M.ASTWTIDD.LKVAVSEELSSSPISD...INFKL..................AFDELL............E.RVKEKEEKE
  520-  585 (47.91/19.29)	FLYSIK...EIN.S.TSTWDECKAL.......................iedsqeyrsigeesfkreIFEEYITHlLEKaKEKERK.RSEEKAKKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      84.66|      20|      20|      49|      68|       3
---------------------------------------------------------------------------
   33-   57 (24.81/17.41)	SVTVSSVEAP.sitssaISDVS.......SPVP
   58-   86 (22.63/15.18)	VVPVPAVFTPL....qaVGSIStvdvkiqSPVS
   87-  100 (20.22/12.71)	V..V....TPL......SVNVS.......EKAE
  101-  122 (17.00/ 9.42)	A..TTALMTT.aatmsvIDDV........SPQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16133 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKEKERKRSEEKAKKEKERGERERRKEKERKEKDREHGRDRGEERSKKIETESGDVDVKEARKREKERDRKHRKRRQNEGDEVSSDKEENEESKKSRRHRSDGKKSRKHVNSNESDSEGRHKRHRREHRHGSRRNGDLEDGELGEDGEIR
2) PSELKLAREQLQRGDGQIMQPDAPATCQVPDSVTVS
570
2
719
37










Molecular Recognition Features






MoRF SequenceStartStop




1) RHKRHRREHRHGSRRNGDLEDGELGEDGEIR
689
719