<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16132

Description Uncharacterized protein
SequenceMASNSQPPGGQTLWPPIGGPAGPPQNFGPPIPIQFQPGFPQQQAHPYNLASSQNFRPVGQGISVSNVGLPASQSQQLQFPQMLQQLPLRPGQPSFGPPSSQGVPSPYAHQNRPLTPQQNTPPLNNHGPSVGGMGVAPSSSYTYQPIPHMHAPIVGGQTSVSSGSHTTLVPPQQSIQQPLVTASMATKVQGSATIQSSTIWIEHTSADGRRYYYNRITRLSSWEKPQDLMTPIERADASTDWKEFTSPDGRKYYYNKATQKSTWTMPSELKLAREQLQRGDGQIMQPDAPATCQVPDSVTVSSVEAPSITSSAISDVSSPVPVVPVPAVFTPLQAVGSISTVDVKIQSPVSVVTPLSVNVSEKAEATTALMTTAATMSVIDDVSPQKVANSVDETSLQDLEEAKNTMAAAGKTNVTVLEEKTVEAELISYANKQDAKDAFKALLESANVESDWSWEQAMRVIINDKRYGALKSLSERKQVFNEYLGQRKKQEAEDRRTKQKQAREDFIKMLEDSDVLTSTTKWSKAITIFEDDERFKAVERVRDREDIFESYITELQKKERAKAHEENKRNIREYKQFLQSCDFIKANSQWRKVQERLEQDERCSRLEKIDRLKIFQEYLNDLEKEEEEQKKIEKEQLRRAERNNRDEFRKLMEGHVAAGVLTAKTHWREYHEKVKDLPAYVAASSNTSGATPKVLFEDVAEELEKQYYDDKIRIKDAIKFKKITMASTWTIDDLKVAVSEELSSSPISDINFKLAFDELLERVKEKEEKEVKKRNNLADNFSQFLYSIKEINSTSTWDECKALIEDSQEYRSIGEESFKREIFEEYITHLLEKAKEKERKRSEEKAKKEKERGERERRKEKERKEKDREHGRDRGEERSKKIETESGDVDVKEARKREKERDRKHRKRRQNEGDEVSSDKEENEESKKSRRHRSDGKKSRKHVNSNESDSEGRHKRHRREHRHGSRRNGDLEDGELGEDGEIR
Length983
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.06
Grand average of hydropathy-1.015
Instability index58.60
Isoelectric point6.76
Molecular weight112001.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16132
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.98|      36|      38|     193|     228|       1
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  193-  228 (68.02/47.49)	T....IQSSTIWIEHTSADGRRYYYNRITRLSSWEKPQDL
  230-  269 (60.06/40.95)	TpierADASTDWKEFTSPDGRKYYYNKATQKSTWTMPSEL
  275-  306 (44.89/28.49)	Q....LQRGDGQIMQPDAPATCQVPDSVT.VSSVEAP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     120.78|      21|      21|     835|     855|       2
---------------------------------------------------------------------------
  835-  854 (27.58/16.05)	........KEKERKRSEEKAKKEKERGE
  889-  915 (21.92/10.75)	VdvkearkREKERDRKHRK.RRQNEGDE
  917-  936 (20.94/ 9.83)	S.......SDKEENEESKKSRRHRSDG.
  937-  955 (20.35/ 9.27)	K.......KSRKHVNSNE..SDSEGRHK
  956-  975 (29.99/18.31)	R.......HRREHRHGSRR.NGDLEDGE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     409.40|      66|      66|     439|     504|       3
---------------------------------------------------------------------------
  376-  457 (59.77/33.88)	MSVIddvspqkvANSVDETSLQDL...EEAKNTMaaagktNVTVLE.EKTVEAELI.SYANKQdAKD............aFKAL..LE...SAN.V.ESDWSWEQA
  458-  525 (91.14/55.83)	MRVI........INDKRYGALKSL...SERKQVF......NEYLGQ.RKKQEAEDR.RTKQKQ.ARE............dFIKM..LE...DSD.VlTSTTKWSKA
  526-  593 (76.29/45.44)	ITIF........EDDERFKAVERV...RDREDIF......ESYITElQKKERAKAH.EENKRN.IRE.............YKQF..LQ...SCDfI.KANSQWRKV
  594-  670 (71.78/42.28)	QERL........EQDERCSRLEKI....DRLKIF......QEYLND.LEKEEEEQK.KIEKEQ.LRR.....aernnrdeFRKL..MEghvAAG.VlTAKTHWREY
  671-  733 (51.14/27.84)	HEKV........KDLPAYVAASSNtsgATPKVLF......EDVAEE.LEKQYYDDKiRI..KD.A...................ikFK...KIT.M.ASTWTIDD.
  734-  802 (59.27/33.53)	LKVA........VSEELSSSPISD...INFKLAF......DELL...........E.RVKEKE.EKEvkkrnnladnfsqFLYS..IK...EIN.S.TSTWDECKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     180.05|      21|      21|     121|     141|       4
---------------------------------------------------------------------------
   15-   27 (26.98/13.62)	P..........PI...GGPA....G..PPQNF
   29-   45 (25.49/12.45)	P..........PIPiQFQP.....GFPQQQAH
   46-   75 (25.66/12.58)	PynlassqnfrPV..GQGISVSNVGLPASQSQ
   80-  101 (26.38/13.15)	P....qmlqqlPLR.PGQPS...FG..PPSSQ
  121-  141 (40.76/24.50)	P..........PLN.NHGPSVGGMGVAPSSSY
  145-  165 (34.78/19.78)	P..........IPH.MHAPIVGGQTSVSSGSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      25.02|      12|      64|     805|     820|       5
---------------------------------------------------------------------------
  811-  826 (12.23/ 6.74)	RSiGEESFKReifE...EY
  857-  871 (12.79/10.81)	RR.KEKERKE...KdreHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.80|      15|      21|     312|     332|       6
---------------------------------------------------------------------------
  312-  332 (17.76/24.66)	AISDVS.......SPVPVvpVpavfTPL
  334-  355 (21.03/ 9.70)	AVGSIStvdvkiqSPVSV..V....TPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16132 with Med35 domain of Kingdom Viridiplantae
Unable to open file!