<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16127

Description Uncharacterized protein
SequenceMDNNNWRPAQAGGVAAAGEPNNNNNTSMGVEGPDWRSQLQADSRQRIVNKIMDTLKRHLPISGPEGLLELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNNGVTNSLPQNPVASNQNPPDPASHSMQSQVLNQGHSSISLPNQPQARQQLLSQNIQNTTASGGIQSSSGLQSAFPSVTGLTPSTMPNAIGQNSTLQNISGISQNSVGQGVPSNIFSNTQRQMQGRQHPQQVVSQPNQQQPTNSQQYMYQQHQNQMMKQKLQQGNIQPSLMQSHIQPQQNLLQSTQLQPSQQSLMQMSSSLQGNQSTQQTQPSMMQSASHSGFQQNQQPSVQQSTASVLQQHTQSVLRQQPQSQQSLHQQSTGLHQQQPSIPQQQQTLAGQQQNATNIQQQKNQQLIGQQNSVTDLQQSQQQQQRLLGQQNNLSNMQQQLLGQQNNISSMNQQQIGSQNGVGLQPQQLLGTQSSVSNMQSHQQSMHLLSQQAKVGGQQQQSTQASLMQIPGQQSQSQPLQPQLMPQLQSQPAQFQQQLGLQHQPNQLQRDMQQRLNSSVIQPPNVAEQKQIQSQRVLPEASSTSMDSTSQTGQANTADWQEEAYQKIKAMKEMYLPDLLEMHHKLSVKFQQHETVAQQPKDQMDKLRLMKIYLERIITFLQVSKNNIPLTHRDKLPGYEKQIISFLNSNRTKKPVPANQQQLQPSGGHTLSMPQQQQPQSQIPQLQQHDNQMNSQMQPMNVPNSVTPEQQTAGTNMSHSSLPLSNHMGVSPMQGMNSLQSGSALEMGQGSVPSSLQHGGMGSRQQNSVNAPSQANMNTLPQGGVNGLQPNINSLQLTSNMLQQQHLKQQQEQQLLQSQQMKQQQQQQLQRQMHQQMLQQQKQQVQQQHQQHPQMQQQQQQQQLQQQQQQKQQLPAQFQAHQMPQLHQMSEDLKMRQAMGFKQGMAPQHHSAGQRAPYHHQQLKPGAQFPISSPQILSAASPQISQHSHSSPQIDQQSLLTFSKSGTPLQSANSPFIVPSPSTPLAPSPLPGDPEKQASGVSSLSNAGNIGHPQTSTALSQAQSLAIGTPGISASPLLAEFIGTDSNQGTEQPLERLVKAVKSISTKAFSASVSDIGSVISMIDRIAGSAPGNGSRAAVGEDLVAMTKCRMQARNFITQDGVSATKKMRRDTSAMPLNGFSSAGSVTDSFKQRNGLEMSDLESTATSRIKRPRIELQLRVVKEPLSSVHILLSPSVQT
Length1234
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.02
Grand average of hydropathy-0.870
Instability index77.87
Isoelectric point9.85
Molecular weight136048.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16127
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     161.97|      30|      30|     435|     464|       3
---------------------------------------------------------------------------
  438-  464 (44.78/ 9.70)	LGQQNNISSMNQQQIGSQNGVGLQPQQ....
  521-  547 (38.39/ 6.69)	MPQLQSQPAQFQQQLGLQH....QPNQlQRD
  838-  865 (40.92/ 7.88)	LQQQHLKQQQEQQLLQSQ.QMKQQ.QQ.QQL
  891-  918 (37.88/ 6.45)	MQQQQQQQQLQQQQQQKQ.QLPAQFQA.HQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.08|      30|      30|     757|     786|       8
---------------------------------------------------------------------------
  121-  146 (34.85/ 6.00)	ASN.QNP...PDPASHSMQS.QVLNQ...GHSSI
  759-  788 (45.93/11.27)	PLS.NHMGVSPMQGMNSLQSGSALEM...GQGSV
  789-  821 (37.30/ 7.17)	PSSlQHGGMGSRQ.QNSVNAPSQANMntlPQGGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.70|      30|      31|     209|     238|       9
---------------------------------------------------------------------------
  199-  228 (41.72/ 8.85)	QNSTLQNISG.ISQNSVGQGVPSN..IFSNTQR
  229-  261 (43.98/ 9.89)	QMQGRQHPQQvVSQPNQQQPTNSQqyMYQQHQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.34|      35|      39|    1034|    1071|      11
---------------------------------------------------------------------------
 1035- 1071 (47.05/28.40)	.SGVSSL.....SNAGNighPQTSTALSQAQSLA...........IGTPGISAS
 1075- 1108 (50.33/23.34)	AEFIGTD.....SNQGT...EQPLERLVKAVK.S...........ISTKAFSAS
 1113- 1160 (28.96/10.27)	GSVISMIdriagSAPGN.....GSRAAVGEDLVAmtkcrmqarnfITQDGVSA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.02|      29|     128|     552|     580|      15
---------------------------------------------------------------------------
  552-  573 (28.29/ 9.96)	..........LNS.SVIQPPNVAEQKQIQSQRV
  574-  604 (37.04/15.62)	LPEASST..sMDStSQTGQANTADWQEEAYQKI
  612-  639 (28.69/10.21)	LPDLLEMhhkLSV.KFQQHETVAQQPKDQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.15|      17|      31|     468|     487|      16
---------------------------------------------------------------------------
  293-  309 (29.72/ 7.49)	QLQPSQQS..LM.Q...........MSSSLQ
  474-  504 (13.43/ 6.07)	NMQSHQQSmhLLsQqakvggqqqqsTQASLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.05|      20|     277|     640|     678|      18
---------------------------------------------------------------------------
  653-  678 (29.00/42.53)	IITFLQVSKNNIPlthrdkLPGYEKQ
  679-  698 (35.06/11.07)	IISFLNSNRTKKP......VPANQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      13|      21|      70|      86|      26
---------------------------------------------------------------------------
   70-   86 (15.33/28.30)	LKKIAVrfeeKIYTAAT
   92-  104 (22.09/20.17)	LRKISL....KMLTMET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16127 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDNNNWRPAQAGGVAAAGEPNNNNNTSMGVEGPDWRSQLQADSRQRIVNKIMDTLK
2) METKSQNNGVTNSLPQNPVASNQNPPDPASHSMQSQVLNQGHSSISLPNQPQARQQLLSQNIQNTTASGGIQSSSGLQSAFPSVTGLTPSTMPNAIGQNSTLQNISGISQNSVGQGVPSNIFSNTQRQMQGRQHPQQVVSQPNQQQPTNSQQYMYQQHQNQMMKQKLQQGNIQPSLMQSHIQPQQNLLQSTQLQPSQQSLMQMSSSLQGNQSTQQTQPSMMQSASHSGFQQNQQPSVQQSTASVLQQHTQSVLRQQPQSQQSLHQQSTGLHQQQPSIPQQQQTLAGQQQNATNIQQQKNQQLIGQQNSVTD
3) QQSQQQQQRLLGQQNNLSNMQQQLLGQQNNISSMNQQQIGSQNGVGLQPQQLLGTQSSVSNMQSHQQSMHLLSQQAKVGGQQQQSTQASLMQIPGQQSQSQPLQPQLMPQLQSQPAQFQQQLGLQHQPNQLQRDMQQRLNSSVIQPPNVAEQKQIQSQRVLPEASSTSMDSTSQTGQANTADWQEE
4) QSANSPFIVPSPSTPLAPSPLPGDPEKQASGVSSLSNAGNIGHPQTSTALSQAQSL
5) YEKQIISFLNSNRTKKPVPANQQQLQPSGGHTLSMPQQQQPQSQIPQLQQHDNQMNSQMQPMNVPNSVTPEQQTAGTNMSHSSLPLSNHMGVSPMQGMNSLQSGSALEMGQGSVPSSLQHGGMGSRQQNSVNAPSQANMNTLPQGGVNGLQPNINSLQLTSNMLQQQHLKQQQEQQLLQSQQMKQQQQQQLQRQMHQQMLQQQKQQVQQQHQQHPQMQQQQQQQQLQQQQQQKQQLPAQFQAHQMPQLHQMSEDLKMRQAMGFKQGMAPQHHSAGQRAPYHHQQLKPGAQFPISSPQILSAASPQISQHSHSSPQIDQQSLLTFSKSG
1
102
414
1006
675
56
412
599
1061
1002










Molecular Recognition Features






MoRF SequenceStartStop




NANANA