<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16115

Description Uncharacterized protein
SequenceMDGSWRNRSLISVFALVFFGCLSVFVVAKEEASKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNQAAANAERTVFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYISIKMKDGDNKVFSPEEVSAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDHRVMDYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSNQHQVRVEIESLYDGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRELGKFDLSGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKAEKITITNDKGRLSQEEIDRMVREAEEFADEDKKVKEKIDARNSLETYIYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDENQSAEKEDYDEKLKEVEAVCNPVITAVYQRSGGAPGAEAGEGEDDDSHDEL
Length667
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.06
Grand average of hydropathy-0.466
Instability index28.37
Isoelectric point5.07
Molecular weight73540.29
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16115
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.65|      26|      27|     574|     600|       1
---------------------------------------------------------------------------
  574-  600 (38.70/28.52)	LETYIYNMKNQInDKDKLADKLESDEK
  603-  628 (42.96/26.89)	IETAVKEALEWL.DENQSAEKEDYDEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.83|      19|      19|     101|     119|       3
---------------------------------------------------------------------------
   78-   96 (28.58/17.94)	DGERLIGEAAKNQAAANAE
  101-  119 (30.69/19.83)	DVKRLIGRKFEDKEVQKDM
  130-  143 (18.56/ 8.97)	DGKPYISIKMKDGD.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      17|      21|     529|     548|       4
---------------------------------------------------------------------------
  529-  548 (22.31/23.14)	KAEKITitnDKGRLSQEEID
  553-  569 (27.33/17.96)	EAEEFA...DEDKKVKEKID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.20|      34|     193|     206|     244|       5
---------------------------------------------------------------------------
  206-  244 (46.30/42.21)	INePTaAAIAYGLDKKGGeknILVFDLGGGTFDVSILTI
  395-  428 (58.90/35.77)	VN.PD.EAVAYGAAVQGG...ILSGEGGDETKDILLLDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.46|      33|     193|     282|     317|       6
---------------------------------------------------------------------------
  283-  317 (49.87/44.93)	KDISKDNRALGKLrrECERAKRALSNQHQVRVEIE
  479-  511 (57.59/38.45)	RSLTKDCRELGKF..DLSGIAPAPRGTPQIEVTFE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16115 with Med37 domain of Kingdom Viridiplantae
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