<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16101

Description Uncharacterized protein
SequenceMNNNNNTSSSSSITNTTTDIIISSSSTTTSSSAVIKQDSETTITTTTTEEPLLPPQPVRVFSPIKEKKEEIFIDKIMEDSSSIAIDEKENGGSGSISGLSLSNGGGGGGNGTPATVFQISLKQPKSNLRHKMSVPGLCRNFSAVSWCAKLNVIACASETCARIPSSRENSAFWIPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPSSCPRALLVANFHGRITIWTQPAKGPANVIKDASFWQCEHEWRQDIAVVTKWLSWMSPYRWLSSNSSSSTFEEKFLSQQTQASARWPNFLCVCSVFTSGSIQLHWSQWSPTQSSAGSKWFSTRKGLLGAGPSGIMTADAIITESGTMHVAGVPIVNPSTVVVWEVTPGPGNECQVTMKSNMSTGVPPSINPPCWTGFAPLAAYLFSWQEYLGSDGKQGIQNDQASSETISLHCSPVSNFSAYVSPEAAAQSTATTWGSAVTAVAFDPACSGSVITVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLKPVVLHPIFGTPASNFGGQAPMQTVWLTRVNKSIIPSTQMKSFRPSTTASSEQNMSDSVTEKVDRLSFDPCDLPSDVRALARIVYSAHGGEVVVAFLEGGFHIFSGENFTPVENCHVCVGSAVAAPSFSSTSCCLAYVWHNTEKDCTMLKIIRVLPPAIQSSEAKVNSATWERALADRFWWSLLVGVDWWDAVGCTQSAAEDEIVSLNSVIAVLDADFHSLPSIHHRQLHGPSLDKIKCRLLEGTNAQEVRALVLDMQARLLLDMLGRGIESALINPETLVSEPWQASGEMLSGIDPNAMTVETALVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVGASAGTVSNRNMVTSPTHSSASPSTTQGGQNGTTSSTGSSQMQAWVQGAIAKISGTADGVSSSTPNPMSGPSPLMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFWRKQLPRFIGGVQKNSQLIGPGKVEDSHGNSTRATSGMLRPEEVQAARSGQLVHGSKGVEEGPAGRSQRFGFGNGGQGYNFEEVKVLFLILIDLCRRTASLAHPLPVSQVASSNIQIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDAEDLDDTPKLSGSSNLFEVTASEDLDSYYGSQGLWPRKRRLSERDAAFGLKTSVGLGEYLGIMGSRRDVVTAVWKTGLRGICA
Length1234
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.08
Grand average of hydropathy-0.151
Instability index46.87
Isoelectric point5.99
Molecular weight133169.73
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16101
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     361.68|     102|     107|     624|     730|       1
---------------------------------------------------------------------------
  553-  613 (66.15/34.09)	......................................TQMK.....SFR..PSTTASSEQNMSDSV.....TEK..VDRLSFDpcdLPSDVRALARI..VYSAHGGEV.......VVAFLE
  624-  730 (170.31/116.03)	FTPVENCHvcvGSAVAAPSFSSTSCCLAYVWHNTEKDCTMLK.....IIRVLPPAIQSSEAKVNSAT.....WERALADRFWWS...LLVGVDWWDAVgcTQSAAEDEIV.SLNS.VIAVLD
  733-  834 (125.22/72.98)	FHSLPSIH...HRQLHGPSLDKIKCRLLEGTNAQEVRALVLDmqarlLLDMLGRGIES..ALINPETlvsepWQ.ASGE........MLSGID.PNAM.....TVETALVpSIQAyVDAILD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.93|      40|      43|     147|     186|       2
---------------------------------------------------------------------------
  124-  163 (72.08/45.22)	PKSNLRHKMSVPGLCRNFSAVSWCAKLNVIACASETCARI
  164-  203 (72.85/45.78)	PSSRENSAFWIPIHIVNPERPTECAVFNVIADSPRDSVQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.10|      15|      17|     864|     878|       4
---------------------------------------------------------------------------
  864-  878 (27.77/15.68)	TVSNRNMVTSPTHSS
  884-  898 (27.33/15.31)	TQGGQNGTTSSTGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.30|      14|      15|    1012|    1025|       5
---------------------------------------------------------------------------
 1012- 1025 (24.41/15.85)	EEVQAARSGQLVHG
 1030- 1043 (26.89/18.31)	EEGPAGRSQRFGFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.43|      31|      33|     263|     294|       7
---------------------------------------------------------------------------
  244-  260 (32.60/16.09)	WQCEHEW...............RQDIAVVTKW
  263-  294 (50.10/33.57)	WMSPYRWLSSNSSSSTFEEkFLSQQTQASARW
  297-  327 (55.73/33.31)	FLCVCSVFTSGSIQLHWSQ.WSPTQSSAGSKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.42|      44|     416|     488|     533|       8
---------------------------------------------------------------------------
  450-  475 (27.17/10.43)	...YVSP....EAAAQST..ATTWGSAVTAVAFDP.............
  488-  533 (79.13/53.57)	EGQYMSPYDPDEGPSITGwrVQRWESSLKPVVLHP.IF.GTPASNFGG
  916-  952 (54.11/28.95)	DGVSSSTPNPMSGP...........SPLMPISINTgTFpGTPAVRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.31|      17|      32|     349|     365|      13
---------------------------------------------------------------------------
  349-  365 (30.25/18.26)	ITESGTMHVAGVPIVNP
  383-  399 (31.06/18.95)	VTMKSNMSTGVPPSINP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16101 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNNNNNTSSSSSITNTTTDIIISSSSTTTSSSAVIKQDSETTITTTTTEEPLLPPQPVRV
2) TVSNRNMVTSPTHSSASPSTTQGGQNGTTSSTGSS
1
864
60
898










Molecular Recognition Features






MoRF SequenceStartStop




NANANA