<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16100

Description Uncharacterized protein
SequenceMNNNNNTSSSSSITNTTTDIIISSSSTTTSSSAVIKQDSETTITTTTTEEPLLPPQPVRVFSPIKEKKEEIFIDKIMEDSSSIAIDEKENGGSGSISGLSLSNGGGGGGNGTPATVFQISLKQPKSNLRHKMSVPGLCRNFSAVSWCAKLNVIACASETCARIPSSRENSAFWIPIHIVNPERPTECAVFNVIADSPRDSVQFIEWSPSSCPRALLVANFHGRITIWTQPAKGPANVIKDASFWQCEHEWRQDIAVVTKWLSWMSPYRWLSSNSSSSTFEEKFLSQQTQASARWPNFLCVCSVFTSGSIQLHWSQWSPTQSSAGSKWFSTRKGLLGAGPSGIMTADAIITESGTMHVAGVPIVNPSTVVVWEVTPGPGNECQVTMKSNMSTGVPPSINPPCWTGFAPLAAYLFSWQEYLGSDGKQGIQNDQASSETISLHCSPVSNFSAYVSPEAAAQSTATTWGSAVTAVAFDPACSGSVITVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLKPVVLHPIFGTPASNFGGQAPMQTVWLTRVNKSIIPSTQMKSFRPSTTASSEQNMSDSVTEKVDRLSFDPCDLPSDVRALARIVYSAHGGEVVVAFLEGGFHIFSGENFTPVENCHVCVGSAVAAPSFSSTSCCLAYVWHNTEKDCTMLKIIRVLPPAIQSSEAKVNSATWERALADRFWWSLLVGVDWWDAVGCTQSAAEDEIVSLNSVIAVLDADFHSLPSIHHRQLHGPSLDKIKCRLLEGTNAQEVRALVLDMQARLLLDMLGRGIESALINPETLVSEPWQASGEMLSGIDPNAMTVETALVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVGASAGTVSNRNMVTSPTHSSASPSTTQGGQNGTTSSTGSSQMQAWVQGAIAKISGTADGVSSSTPNPMSGPSPLMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFWRKQLPRFIGGVQKNSQLIGPGKVEDSHGNSTRATSGMLRPEEVQAARSGQLVHGSKGVEEGPAGRSQRFGFGNGGQGYNFEEVKVLFLILIDLCRRTASLAHPLPVSQVASSNIQIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDAEDLDDTPKLSGSSNLFEVTASEDLDSYYGSQGLWPRKRRLSERDAAFGLKTSVGLGEYLGIMGSRRDVVTAVWKTGLRGIWYKCIRCLRQTSAFASPGTTNLTDQSEREAWWISRWSYCCPMCGGTWVRVV
Length1283
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.08
Grand average of hydropathy-0.160
Instability index47.10
Isoelectric point6.14
Molecular weight138969.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16100
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     361.68|     102|     107|     624|     730|       1
---------------------------------------------------------------------------
  553-  613 (66.15/29.12)	......................................TQMK.....SFR..PSTTASSEQNMSDSV.....TEK..VDRLSFDpcdLPSDVRALARI..VYSAHGGEV.......VVAFLE
  624-  730 (170.31/99.15)	FTPVENCHvcvGSAVAAPSFSSTSCCLAYVWHNTEKDCTMLK.....IIRVLPPAIQSSEAKVNSAT.....WERALADRFWWS...LLVGVDWWDAVgcTQSAAEDEIV.SLNS.VIAVLD
  733-  834 (125.22/62.36)	FHSLPSIH...HRQLHGPSLDKIKCRLLEGTNAQEVRALVLDmqarlLLDMLGRGIES..ALINPETlvsepWQ.ASGE........MLSGID.PNAM.....TVETALVpSIQAyVDAILD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.93|      40|      43|     147|     186|       2
---------------------------------------------------------------------------
  124-  163 (72.08/45.78)	PKSNLRHKMSVPGLCRNFSAVSWCAKLNVIACASETCARI
  164-  203 (72.85/46.35)	PSSRENSAFWIPIHIVNPERPTECAVFNVIADSPRDSVQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     319.10|      80|     114|     838|     917|       4
---------------------------------------------------------------------------
  279-  354 (61.54/27.74)	...........FEEKFLSQQTQASArwpnflcvcsvftsGSIQLHWSQWSPTQSSAGSkwfSTRKGllgaGPSGI...........MTA...DAIITES.GT...
  838-  917 (139.90/73.25)	HFITRLRRYASFCRTLASHAVGASA..............GTVSNRNMVTSPTHSSASP...STTQG....GQNGTTSSTG...SSQMQAWVQGAIAKIS.GTADG
  955- 1032 (117.67/60.34)	HFLHRLCQLLLFCFFFWRKQLPRFI..............GGVQKNSQLIGPGKVEDS.......HG......NSTRATSGmlrPEEVQAARSGQLVHGSkGVEEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.03|      60|     796|     417|     485|       5
---------------------------------------------------------------------------
  417-  485 (92.39/76.90)	EYLG..........SDGKQGIQndqasseTISLHCSP.VSNFSAYVSPEA...AAQSTATTWgsAVTAVAF.DPACSGSVITVV
 1209- 1283 (93.64/58.15)	EYLGimgsrrdvvtAVWKTGLR.......GIWYKCIRcLRQTSAFASPGTtnlTDQSEREAW..WISRWSYcCPMCGGTWVRVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.12|      27|      33|     489|     517|       6
---------------------------------------------------------------------------
  489-  517 (44.31/31.10)	GQYMSPYDpDEGPSITGWrVQRWESSLKP
  525-  551 (49.80/25.90)	GTPASNFG.GQAPMQTVW.LTRVNKSIIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16100 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNNNNNTSSSSSITNTTTDIIISSSSTTTSSSAVIKQDSETTITTTTTEEPLLPPQPVRV
2) TVSNRNMVTSPTHSSASPSTTQGGQNGTTSSTGSS
1
864
60
898










Molecular Recognition Features






MoRF SequenceStartStop




NANANA