<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16092

Description Uncharacterized protein
SequenceMEGSAAAAGGMVVGGGGGGGGGGDQQLPPKMMVERLNPAVQQQLNIESVKTRAIGLYKTISRILEDFDNIARTNSTPKWQDIMGQFSMVNLELFNIVEDIKNVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEAEDNSKREQLLHGMQNLSIPAQIEKLKTRIDMIGAACESAEKVIADCRKAYGLGSRQGPAVIPTLDKVQAAKIQEQETLLRAAVNSGQGLHIPVDQRQHPSSLPMHLADVLIVADGAQGFSDGSGMYAKATPPSSNNANTQGTVLQATGGQFIGRSIPSPSAPSGATSFDNSSTSPLPYANSPRSGTNIMNTPSPQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQRQKIMQLPHHQQQQLLAQQQYRQSSASGLGQSQLPQLDMQSQTQKFQPVGQHQMQYSQSLAHQQFQNRQLQSGLQHNIGQNQLTQGNQLRSHLSQFSGTANSALFNTAQTTPNAQMMTNISATMPSQSLLPRMQFGLSSGHPQRSHAPQILNDQMFSMAAPNPGSMMPVQQQQQALGGQGGFGSMAANSQNLQSNVVGMQNASQIPNFQQQRQQNQQ
Length577
PositionHead
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.04
Grand average of hydropathy-0.667
Instability index67.82
Isoelectric point9.13
Molecular weight62670.41
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16092
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.53|      16|      16|     331|     346|       1
---------------------------------------------------------------------------
  331-  346 (31.30/ 7.50)	QQQTQQQQQQQQQQQQ
  348-  363 (29.22/ 6.54)	QQQQQQQQQQQQQRQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      90.01|      18|      18|     485|     502|       2
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  289-  304 (20.34/ 6.19)	GRSIPSP...saP....SGA...T.SF
  305-  322 (23.08/ 8.11)	DNSSTSP....lP.....YANSPRSGT
  496-  516 (23.77/ 8.59)	GLSSGHPqrshaP.....QILNDQM.F
  517-  542 (22.83/ 7.93)	SMAAPNP.gsmmPvqqqQQALGGQGGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.08|      18|     159|     391|     415|       3
---------------------------------------------------------------------------
  391-  415 (26.80/18.34)	QSQLPQLDMQSQTqkfqpvgQHQMQ
  422-  439 (30.28/ 9.50)	HQQFQNRQLQSGL.......QHNIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.10|      30|      36|     155|     188|       4
---------------------------------------------------------------------------
  155-  188 (47.09/38.58)	PAQIEKLktriDMIGAA.CESAEKVI.ADCRKAYGL
  194-  225 (41.01/24.57)	PAVIPTL....DKVQAAkIQEQETLLrAAVNSGQGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.45|      10|      31|      63|      72|       5
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   63-   72 (17.23/14.86)	ILEDFDNIAR
   96-  105 (16.23/13.58)	IVEDIKNVSK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.56|      19|      36|     235|     253|       6
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  235-  253 (32.63/19.77)	PSSLPMHLADVLIVADGAQ
  268-  286 (32.92/20.01)	PSSNNANTQGTVLQATGGQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16092 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SDGSGMYAKATPPSSNNANTQGTVLQATGGQFIGRSIPSPSAPSGATSFDNSSTSPLPYANSPRSGTNIMNTPSPQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQRQKIMQLPHHQQQQLLAQQQYRQSSASGLGQSQLPQLDMQSQTQKFQPVGQHQMQYSQSLAHQQFQNRQLQSGLQHNIGQNQLTQGNQLRSHLSQFSGTANSALFNTAQTTPNAQMMTNISATMPSQSLLPRMQFGLSSGHPQRSHAPQILNDQMFSMAAPNPGSMMPVQQQQQALGGQGGFGSMAANSQNLQSNVVGMQNASQIPNFQQQRQQNQQ
256
577










Molecular Recognition Features






MoRF SequenceStartStop




NANANA