<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16091

Description Uncharacterized protein
SequenceMEGSAAAAGGMVVGGGGGGGGGGDQQLPPKMMVERLNPAVQQQLNIESVKTRAIGLYKTISRILEDFDNIARTNSTPKWQDIMGQFSMVNLELFNIVEDIKNVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEAEDNSKREQLLHGMQNLSIPAQIEKLKTRIDMIGAACESAEKVIADCRKAYGLGSRQGPAVIPTLDKVQAAKIQEQETLLRAAVNSGQGLHIPVDQRQHPSSLPMHLADVLIVADGAQGFSDGSGMYAKATPPSSNNANTQGTVLQATGGQFIGRSIPSPSAPSGATSFDNSSTSPLPYANSPRSGTNIMNTPSPQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQRQKIMQLPHHQQQQLLAQQQYRQSSASGLGQSQLPQLDMQSQTQKFQPVGQHQMQYSQSLAHQQFQNRQLQSGLQHNIGQNQLTQGNQLRSHLSQFSGTANSALFNTAQTTPNAQMMTNISATMPSQSLLPRMQCLAWQLQILVV
Length505
PositionHead
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.04
Grand average of hydropathy-0.592
Instability index67.36
Isoelectric point8.89
Molecular weight55031.24
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16091
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.03|      16|      16|     331|     346|       1
---------------------------------------------------------------------------
  331-  346 (32.92/10.62)	QQQTQQQQQQQQQQQQ
  348-  363 (31.12/ 9.63)	QQQQQQQQQQQQQRQK
  400-  415 (25.98/ 6.81)	QSQTQKFQPVGQHQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.35|      27|      32|     269|     295|       2
---------------------------------------------------------------------------
  211-  230 (18.11/ 6.00)	.......QETLLRAAvnSGQ..GLHI...PVD
  236-  260 (37.50/20.06)	SSLPMHLADVLIVAD..GAQ..GFSD...GSG
  269-  295 (47.74/27.47)	SSNNANTQGTVLQAT..GGQFIGRSI...PSP
  303-  330 (37.00/19.70)	SFDNSSTSP..LPYA..NSPRSGTNImntPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.45|      10|      32|      63|      72|       3
---------------------------------------------------------------------------
   63-   72 (17.23/14.19)	ILEDFDNIAR
   96-  105 (16.23/12.97)	IVEDIKNVSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.41|      23|      43|     374|     396|       4
---------------------------------------------------------------------------
  374-  396 (44.24/16.17)	QLLAQQQYRQSS.ASGL....GQSQLPQ
  418-  445 (31.17/ 9.60)	QSLAHQQFQNRQlQSGLqhniGQNQLTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.02|      21|      38|     147|     171|       6
---------------------------------------------------------------------------
  147-  171 (31.92/33.04)	HGMQNLSIPAQIEKLktriDMIGAA
  186-  206 (37.10/26.32)	YGLGSRQGPAVIPTL....DKVQAA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16091 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SDGSGMYAKATPPSSNNANTQGTVLQATGGQFIGRSIPSPSAPSGATSFDNSSTSPLPYANSPRSGTNIMNTPSPQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQRQKIMQLPHHQQQQLLAQQQYRQSSASGLGQSQLPQLDMQSQTQKFQPVGQHQMQYSQ
256
418










Molecular Recognition Features






MoRF SequenceStartStop




NANANA