<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16090

Description Uncharacterized protein
SequenceMEGSAAAAGGMVVGGGGGGGGGGDQQLPPKMMVERLNPAVQQQLNIESVKTRAIGLYKTISRILEDFDNIARTNSTPKWQDIMGQFSMVNLELFNIVEDIKNVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEAEDNSKREQLLHGMQNLSIPAQIEKLKTRIDMIGAACESAEKVIADCRKAYGLGSRQGPAVIPTLDKVQAAKIQEQETLLRAAVNSGQGLHIPVDQRQHPSSLPMHLADVLIVADGAQGFSDGSGMYAKATPPSSNNANTQGTVLQATGGQFIGRSIPSPSAPSGATSFDNSSTSPLPYANSPRSGTNIMNTPSPQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQRQKIMQLPHHQQQQLLAQQQYRQSSASGLGQSQLPQLDMQSQTQKFQPVGQHQMQYSQSLAHQQFQNRQLQSGLQHNIGQNQLTQGNQLRSHLSQFSGTANSALFNTAQTTPNAQMMTNISATMPSQSLLPRMQFGLSSGHPQRSHAPQILNDQKIGYRNGSDCDRSVELPISFEVCRISTDCSCFSEKFLLQFMTKS
Length558
PositionHead
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.04
Grand average of hydropathy-0.619
Instability index65.11
Isoelectric point8.65
Molecular weight60958.71
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16090
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.43|      16|      16|     331|     346|       1
---------------------------------------------------------------------------
  336-  352 (28.76/ 8.20)	QQQQQQQQQQQqQQQQQ
  420-  435 (25.67/ 6.60)	LAHQQFQNRQL.QSGLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.60|      16|      16|     476|     491|       2
---------------------------------------------------------------------------
  476-  491 (28.75/16.53)	MMTNISATMPSQSLLP
  493-  508 (30.85/18.27)	MQFGLSSGHPQRSHAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.83|      22|      22|     353|     374|       3
---------------------------------------------------------------------------
  325-  364 (26.96/ 6.79)	MNTPSPQQQTqqqqqqqqqqqqqqqqqqQQQQQQQQRQKI
  365-  386 (37.22/12.03)	MQLPHHQQQQ..................LLAQQQYRQSSA
  387-  409 (27.65/ 7.14)	SGLGQSQLPQ.................lDMQSQTQKFQPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.27|      26|      32|     247|     275|       4
---------------------------------------------------------------------------
  247-  272 (46.70/24.54)	IVADGAQGFSDGSG...MYAKATPPSSNN
  280-  297 (30.32/15.44)	LQATGGQ.FI.GRS...I......PSPSA
  298-  323 (25.25/10.91)	..PSGATSFDNSSTsplPYANSPRSGTN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.31|      34|      38|     155|     192|       5
---------------------------------------------------------------------------
  155-  192 (54.38/40.89)	PAQIEKLktriDMIGAA.CESAEKVI.ADCRKAYGL....GSRQ
  194-  233 (42.93/24.02)	PAVIPTL....DKVQAAkIQEQETLLrAAVNSGQGLhipvDQRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.45|      10|      31|      63|      72|       6
---------------------------------------------------------------------------
   63-   72 (17.23/13.40)	ILEDFDNIAR
   96-  105 (16.23/12.24)	IVEDIKNVSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16090 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SDGSGMYAKATPPSSNNANTQGTVLQATGGQFIGRSIPSPSAPSGATSFDNSSTSPLPYANSPRSGTNIMNTPSPQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQRQKIMQLPHHQQQQLLAQQQYRQSSASGLGQSQLPQLDMQSQTQKFQPVGQHQMQYSQSLAHQQFQNRQLQSGLQHNIGQNQLTQGNQLRSH
256
452










Molecular Recognition Features






MoRF SequenceStartStop




NANANA