<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16084

Description Uncharacterized protein
SequenceMETTVVIGVRSNKSKSSLRAVQWVLKNNHIHHIDHIILIHVIPPITSIPTPSGKHIMVMDMDADLVSIYRQDMKSKCDDIFLPFKRLCKTKQMETLLLEDENPADALLRYISEKGCKYLVLGSSSSNYITRKLKRPDVPSTVLKFAPNTCNIYVVAGHKLLTKLENSLSLAGTSAGHDTQREYREGADGIDSMELHCDSVESKSNKTLAESPKDISDQSLQAYSSGGSSSSTLLEDTPRTDQLRDEIEQMQIELRTTLEMYDQACGDLVQVQNQVQSLTSECLEEARRVNDVVNREEMLRKFVAEKRQKYLEVTKEVEVSKQLFAKEAHERHKAELIALIETFKKQETLDALFSRDKRYRKYSRDEIEFATEFFSDAKKIGEGGYGKVYRCTLDNTPVAIKVLHTDACDKKQEFLREVEVLSQLRHPYLVLLLAACPEIGCLVYEYMENGSLEERLSCKNGTPPLPWFVRFRIACEVASGLAFLHSSKPEPIVHRDLKPGNILLDRNYVSKIGDVGLAELMSDVVPDNVTEYRDTIIAGTLCYMDPEYQRTGTVRPKSDVYAFGIIVLQLLTARHPKGLIMAVENAIQCGSFRDILDNSISDWPLAESEDLARIALRCSNLRCRDRPDLELEVLPILQKLRSIADSRFQLQKHNMYTPNHYFCPILQEIMNDPYIAADGFTYEHIAIKTWLEKYSVSPVTRLKLSHTILIPNNTLRSSIQNWRQDKSGQKLIDEMERK
Length738
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy-0.378
Instability index49.95
Isoelectric point6.18
Molecular weight84088.40
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16084
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      29|     635|     648|       1
---------------------------------------------------------------------------
  635-  648 (25.06/18.10)	PILQKLRS...IADSRF
  664-  680 (20.81/13.81)	PILQEIMNdpyIAADGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.94|      11|     102|     305|     323|       2
---------------------------------------------------------------------------
  315-  333 (12.39/ 9.67)	KEVEVSKQlfakeaheRHK
  416-  427 (15.54/ 6.40)	REVEVLSQ.......lRHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.46|      16|     102|     111|     126|       3
---------------------------------------------------------------------------
  111-  126 (29.09/18.99)	ISEKGCK.YLVLGSSSS
  215-  231 (24.37/14.76)	ISDQSLQaYSSGGSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.70|      12|      28|     586|     597|       5
---------------------------------------------------------------------------
  586-  597 (22.60/13.36)	AIQCGSF..RDILD
  615-  628 (18.10/ 9.38)	ALRCSNLrcRDRPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16084 with Med32 domain of Kingdom Viridiplantae
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