<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16083

Description Uncharacterized protein
SequenceMTKTKLSRQAHPSTSGRVPKVNWPEHASARKDFSCQDKFLTSNFLFSLPEHKSSAQGTSSRSMACAIVNGKMLQTSQVKEAWKTLSSLQVMRRTYLVPGKTTPVGQNISSDSLQSKTLESSRDTRIRSTLWSSPDTTHRASHSSVENSADRLQQISDCDGRIGGSVSYKSTTLQCRMSAGNSDKSENMLRTSGSNEPVFYSSIPYIRDHLSVTPNYSKQKNGFVEDINDDDILKNVDVDQIVMEHLQSTCTPQPSCNLPPSTPAIRNIERSDEVNLPPELSTKCNHGFKVALCPEAACHLQEMKDLLISISNELLDNDDLSLVHTEKLRQDRLELKKIVPKLETYLNSLSMDEERKRSHFSASSAASKGFQYETPSVGAYKIDPLKFDSQVHICTEPGISIKWVPPSMSLSTFDRFGVQQASVEREAFIPKFGEVNYIEGSNDKRWSSCDFPWTKKLEALNKKVFGNHSFRPNQREVINATMSGYDAFVLMPTGGGKSLTYQLPALISSGITLVVSPLVSLIQDQIMHLLLANIPSAYLSATLEWSDQQEIFRELTSDCCRYKLLYVTPEKIAKSDVLLRHLENLNARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVRALGLVNCIVFRQSFNRPNLWYYVLPKTKSCLDDIDKFIKNNHSEECGIIYCLSRMDCEKVAEKLQECGHKASFYHGSMDPQQRSFVQKQWSKDEINIICATVAFGMGINKPDVRFVLHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYSYSDYIRVKHMISQGAMEQSSFASGPRRYPISNSDRILETHTENLLRMVSYCENDVDCRRLLQLVHFGEKFDPGKCSRTCDNCSKSSQYAEKDVADTANQLVELIRSAGQQYSSSHILEVFKGSMNQHVKKYRHDSLSLHGAGKHLAKGEASRILRHLVIEDVLAEEVKKSDLYGSVSSVLKVNEYKARELQGGGKKFIIRFPASTKAGNLRKPEETPAKGSLFSRKMNSSVKDASGQPQHAADLDIALFNALRSLRTVLVKEAGDGVMAYHIFSNTTLHYISQRVPRTREELLEISGIGKGKLTKYGDRVLETIESTIKEYYKTDKSGSSGNDSAEVNKKRRNSRGISSSDSREDDDFIDSNSVSKKRATKDGSNNNEQCIDVDLDWDDSENEMDVKDSDIDTSRNDSGRVLPSWSARGNKGHVEGRNLFKENAFKG
Length1231
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy-0.555
Instability index50.25
Isoelectric point8.23
Molecular weight137935.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16083
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.72|      59|     382|     779|     840|       1
---------------------------------------------------------------------------
  779-  840 (92.70/71.93)	RAGRDGQPSS..CV.LYYSYSDYiRVKHMISQGAMEQSSFASGpRRYPiSNSDRILETHTE..NLLR
 1162- 1225 (92.02/57.79)	RATKDGSNNNeqCIdVDLDWDDS.ENEMDVKDSDIDTSRNDSG.RVLP.SWSARGNKGHVEgrNLFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.40|      18|      20|     675|     692|       4
---------------------------------------------------------------------------
  675-  692 (33.93/20.53)	CLDDIDKFIKNNHSEECG
  696-  713 (33.46/20.15)	CLSRMDCEKVAEKLQECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.07|      47|      59|     104|     152|       5
---------------------------------------------------------------------------
  104-  152 (68.45/47.52)	VGQNIS..SDSLQSKTLESSRDtRIRSTLWSSpDTTHRASHSSVENSADRL
  162-  210 (76.62/44.18)	IGGSVSykSTTLQCRMSAGNSD.KSENMLRTS.GSNEPVFYSSIPYIRDHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.76|      11|      24|      24|      34|       7
---------------------------------------------------------------------------
   24-   34 (20.46/12.29)	PEHASARKDFS
   49-   59 (20.30/12.13)	PEHKSSAQGTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.33|      15|      23|     977|     998|      12
---------------------------------------------------------------------------
  977-  991 (26.23/35.32)	NEYKARELQGGGKKF
 1003- 1017 (26.10/12.29)	NLRKPEETPAKGSLF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16083 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ENEMDVKDSDIDTSRNDSGRVLPSWSARGNKGHVEGRNLFKEN
2) TRIRSTLWSSPDTTHRASHSSVENSADRLQQ
3) YYKTDKSGSSGNDSAEVNKKRRNSRGISSSDSREDDDFIDSNSVSKKRATKDGSNNNEQCIDVDLDWDD
1185
124
1115
1227
154
1183










Molecular Recognition Features






MoRF SequenceStartStop




1) KGHVEGRNLFKENAFKG
2) MTKTKLSRQA
3) RVLPSWSAR
1215
1
1204
1231
10
1212