<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16082

Description Uncharacterized protein
SequenceMAEKQLIVVVEGTAAMGPYWNSIITDYLEKIIRCFTSNESAGQKLLASNAEFSLVVFNAHGSYSACLVQRSGWTKNVDLFLQWLSSISFTGGGFSDVAIAEGLSEALMMFPLAPTGSATQSVDGHNKHCILVAASNPYPLPTPVYRPKIPKMEQGEDNEQSSESCLADAETVAKSFSKCSLSLSVISPKQLPKLRAIYNAGKRNPRAADPSVDNIKNPYFLVLLSEIFIEARSALSRSGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHEFKPVVNANVSILNTLSQVRSGSLTGASSMGLQTMGGTPVAMHMSNMISSGMVSSALPAAQNVFSSAQSGITSIGGGGTGALVGSAPIAQSSALGSFASATSNMSGNSNLGASQPLNNLQGAVSLGQSAPVNQSNIPGGQIGQNGAITQNVMNGLGPSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQSQPGPAKYVKVWEGALSGQRQGQPVFITKLEVFLHVLERIYSK
Length590
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.05
Grand average of hydropathy-0.080
Instability index52.89
Isoelectric point8.20
Molecular weight61095.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     211.48|      37|      40|     398|     434|       1
---------------------------------------------------------------------------
  318-  353 (34.84/11.15)	QSMPSLHTSSPSSN...SQEVTAN...GD.......NVHEF...KPVvnANV
  354-  393 (43.67/15.87)	SILNTLSQVRSGSL...TGASSMGlqtMG.......GTPVAMHMSNM..ISS
  398-  434 (59.24/24.20)	SALPAAQNVFSSAQ...SGITSIG...GG.......GTGALVGSAPI..AQS
  439-  477 (26.79/ 6.84)	S........FASATsnmSGNSNLG...ASqplnnlqGAVSLGQSAPV..NQS
  486-  518 (46.94/17.62)	QNGAITQNVMNGLG...PSISS.....GG.......GT..MIPTPGM..SQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.73|      16|      40|     132|     152|       2
---------------------------------------------------------------------------
  132-  147 (30.81/13.94)	VAASNPYPLPT...PVYRP
  244-  262 (21.92/11.89)	PSNHSPIKMDTsapPVSGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16082 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHE
2) SISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQ
238
501
344
547










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKVW
554
559