<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16081

Description Uncharacterized protein
SequenceMFPLAPTGSATQSVDGHNKHCILVAASNPYPLPTPVYRPKIPKMEQGEDNEQSSESCLADAETVAKSFSKCSLSLSVISPKQLPKLRAIYNAGKRNPRAADPSVDNIKNPYFLVLLSEIFIEARSALSRSGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHEFKPVVNANVSILNTLSQVRSGSLTGASSMGLQTMGGTPVAMHMSNMISSGMVSSALPAAQNVFSSAQSGITSIGGGGTGALVGSAPIAQSSALGSFASATSNMSGNSNLGASQPLNNLQGAVSLGQSAPVNQSNIPGGQIGQNGAITQNVMNGLGPSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQSQPGPAKYVKVWEGALSGQRQGQPVFITKLEGYRSASASETLAADWPPMMQIVRLISQDHMNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKASRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQQQQQQQQLQQQQQQQQMQQQMQQQQQQQQQQQLQQQQHQQSQQQQIQQSQQLQQLQQQSQQHQQSQQQHQHQQMVGALIGQGYVQGPSRSQLMSQGQIPSQAPSNMPGSGFLS
Length698
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.04
Grand average of hydropathy-0.465
Instability index70.95
Isoelectric point9.34
Molecular weight74111.28
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16081
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     170.85|      23|      23|     572|     594|       1
---------------------------------------------------------------------------
  572-  594 (51.29/14.26)	QQQQQLQQQQQQQQQQQQQQQLQ
  597-  619 (51.53/14.36)	QQQQQMQQQMQQQQQQQQQQQLQ
  621-  638 (31.63/ 6.43)	....Q.QHQQSQQQQIQQSQQLQ
  639-  658 (36.41/ 8.34)	QLQQQSQQHQQSQQQHQHQQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.19|      39|      39|     259|     297|       2
---------------------------------------------------------------------------
  276-  314 (57.92/24.74)	AMHMSNMIS.SGMVSSALPAAQ.N...vF.SSAQS.G.......IT...SIG.GGGT
  316-  366 (34.48/11.31)	ALVGSAPIAqSSALGSFASATS.N....M.SGNSNLGasqplnnLQgavSLGqSAPV
  367-  405 (39.87/14.40)	..NQSN.IP.GGQIGQNGAITQ.NvmngL.GPSISSG.......GG...TMI.PTP.
  427-  464 (51.92/21.31)	NMPMSQQAS.VGMQSQPGPAKYvK....VwEGALSGQ.......RQ.......GQPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.98|      68|     145|       3|      80|       3
---------------------------------------------------------------------------
    3-   80 (104.54/82.11)	PLA.PTGSATQSVDG.H.NKHCILVAAsnpypLPTPVYrpkipKMEQGEDNEQSSESCLADAETVAKSFSKCSLSLSVISP
  150-  220 (106.44/61.37)	PVSgPPPTTISSANGiHvNRQSVPVGN.....IPTATV.....KVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16081 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAVSLGQSAPVNQSNIPGGQIGQNGAITQN
2) PSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQ
3) SGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHE
4) VGALIGQGYVQGPSRSQLMSQGQIPSQAPSNMPGSGFLS
356
392
130
660
385
439
236
698










Molecular Recognition Features






MoRF SequenceStartStop




1) KLRAIY
2) PVYRPKIPK
85
35
90
43