<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16080

Description Uncharacterized protein
SequenceMAEKQLIVVVEGTAAMGPYWNSIITDYLEKIIRCFTSNESAGQKLLASNAEFSLVVFNAHGSYSACLVQRSGWTKNVDLFLQWLSSISFTGGGFSDVAIAEGLSEALMMFPLAPTGSATQSVDGHNKHCILVAASNPYPLPTPVYRPKIPKMEQGEDNEQSSESCLADAETVAKSFSKCSLSLSVISPKQLPKLRAIYNAGKRNPRAADPSVDNIKNPYFLVLLSEIFIEARSALSRSGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHEFKPVVNANVSILNTLSQVRSGSLTGASSMGLQTMGGTPVAMHMSNMISSGMVSSALPAAQNVFSSAQSGITSIGGGGTGALVGSAPIAQSSALGSFASATSNMSGNSNLGASQPLNNLQGAVSLGQSAPVNQSNIPGGQIGQNGAITQNVMNGLGPSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQSQPGPAKYVKVWEGALSGQRQGQPVFITKLEGYRSASASETLAADWPPMMQIVRLISQDHMNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKASRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQQQQQQQQLQQQQQQQQMQQQMQQQQQQQQQQQLQQQQHQQSQQQQIQQSQQLQQLQQQSQQHQQSQQQHQHQQMVGALIGQGYVQGPSRSQLMSQGQIPSQAPSNMPGSGFLS
Length806
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.05
Grand average of hydropathy-0.360
Instability index65.15
Isoelectric point8.74
Molecular weight85796.48
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16080
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     170.85|      23|      23|     680|     702|       1
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  680-  702 (51.29/14.80)	QQQQQLQQQQQQQQQQQQQQQLQ
  705-  727 (51.53/14.89)	QQQQQMQQQMQQQQQQQQQQQLQ
  729-  746 (31.63/ 6.82)	....Q.QHQQSQQQQIQQSQQLQ
  747-  766 (36.41/ 8.77)	QLQQQSQQHQQSQQQHQHQQ...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.19|      39|      39|     367|     405|       2
---------------------------------------------------------------------------
  384-  422 (57.92/23.82)	AMHMSNMIS.SGMVSSALPAAQ.N...vF.SSAQS.G.......IT...SIG.GGGT
  424-  474 (34.48/10.90)	ALVGSAPIAqSSALGSFASATS.N....M.SGNSNLGasqplnnLQgavSLGqSAPV
  475-  513 (39.87/13.87)	..NQSN.IP.GGQIGQNGAITQ.NvmngL.GPSISSG.......GG...TMI.PTP.
  535-  572 (51.92/20.51)	NMPMSQQAS.VGMQSQPGPAKYvK....VwEGALSGQ.......RQ.......GQPV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.38|      40|      40|     242|     281|       3
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  205-  229 (27.36/ 9.25)	...............PRAADPSVDNIKNPYFLVLLSE....IFI
  236-  275 (71.37/34.82)	SRSGIT..NMPSNHSPIKMDTSAPPVSGPPPTTISSANG..IHV
  276-  315 (54.87/25.23)	NRQSVPvgNIPTATVKVEPNTVASMTSGTAFPHLPSVS....HA
  316-  343 (34.78/13.56)	ASQS.....MPSLH......TSSP..SSNSQEV..TANGdnVH.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.72|      25|     291|      51|      91|       4
---------------------------------------------------------------------------
   51-   91 (33.54/63.01)	EFSLVVfNAHGSYSACLVQ.RSGwtknvdlflqwlssiSFTG
  344-  369 (41.18/28.23)	EFKPVV.NANVSILNTLSQvRSG...............SLTG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.10|      25|     145|     624|     648|       5
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  624-  648 (43.57/20.29)	ALNQHGFLGQLQEKKLCAVIQLPSQ
  770-  794 (44.54/20.90)	ALIGQGYVQGPSRSQLMSQGQIPSQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.75|      35|      39|     114|     152|       6
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  118-  152 (64.81/48.69)	ATQSVDGHNKHCI....LVAAS.NPYPLPTPVYRPK.IPKM
  154-  194 (43.94/21.91)	QGEDNEQSSESCLadaeTVAKSfSKCSLSLSVISPKqLPKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16080 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAVSLGQSAPVNQSNIPGGQIGQNGAITQN
2) PSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQ
3) SGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHE
4) VGALIGQGYVQGPSRSQLMSQGQIPSQAPSNMPGSGFLS
464
500
238
768
493
547
344
806










Molecular Recognition Features






MoRF SequenceStartStop




NANANA