<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16079

Description Uncharacterized protein
SequenceMAEKQLIVVVEGTAAMGPYWNSIITDYLEKIIRCFTSNESAGQKLLASNAEFSLVVFNAHGSYSACLVQRSGWTKNVDLFLQWLSSISFTGGGFSDVAIAEGLSEALMMFPLAPTGSATQSVDGHNKHCILVAASNPYPLPTPVYRPKIPKMEQGEDNEQSSESCLADAETVAKSFSKCSLSLSVISPKQLPKLRAIYNAGKRNPRAADPSVDNIKNPYFLVLLSEIFIEARSALSRSGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHEFKPVVNANVSILNTLSQVRSGSLTGASSMGLQTMGGTPVAMHMSNMISSGMVSSALPAAQNVFSSAQSGITSIGGGGTGALVGSAPIAQSSALGSFASATSNMSGNSNLGASQPLNNLQGAVSLGQSAPVNQSNIPGGQIGQNGAITQNVMNGLGPSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQSQPGPAKYVKVWEFFIMQGALSGQRQGQPVFITKLEGYRSASASETLAADWPPMMQIVRLISQDHMNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKASRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQQQQQQQQLQQQQQQQQMQQQMQQQQQQQQQQQLQQQQHQQSQQQQIQQSQQLQQLQQQSQQHQQSQQQHQHQQMVGALIGQGYVQGPSRSQLMSQGQIPSQAPSNMPGSGFLS
Length811
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.05
Grand average of hydropathy-0.348
Instability index64.71
Isoelectric point8.74
Molecular weight86463.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16079
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.77|      23|      23|     685|     707|       1
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  685-  707 (51.26/16.40)	QQQQQLQQQQQQQQQQQQQQQLQ
  710-  732 (51.46/16.49)	QQQQQMQQQMQQQQQQQQQQQLQ
  734-  754 (43.08/12.76)	QQHQQ..SQQQQIQQSQQLQQLQ
  755-  771 (29.97/ 6.92)	QQSQQHQQSQQQHQHQQ......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     221.84|      36|      38|     370|     405|       2
---------------------------------------------------------------------------
  370-  401 (55.22/21.59)	...........ASSM.GLQTMGGT.......PVAMHMSNMISSGMVSSALP
  402-  430 (33.25/10.06)	AAQN...vfssAQS..GITSIGGG.......G.........TGALVGSA.P
  431-  454 (31.06/ 8.92)	IAQS...........sAL....GS........FASATSNM..SG..NSNLG
  455-  489 (38.58/12.87)	ASQP.............LNNLQGAvslgqsaPV..NQSN.IPGGQIGQNGA
  490-  525 (36.66/11.86)	ITQNvmnglgpSISS.GGGTMIPT.......P...GMSQQVQTGMQS....
  527-  552 (27.08/ 6.83)	.....................GGA....nslATNMPMSQQASVGMQSQPGP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.41|      52|      68|     210|     277|       3
---------------------------------------------------------------------------
  210-  274 (69.96/92.49)	PsVDNIknPYFLV.........LLSEIFIEARSALSRSGITNMPSNHspikmdTSAPpvSGPPPTTisSANG..IH
  281-  343 (82.46/53.58)	P.VGNI..PTATVkvepntvasMTSGTAFPHLPSVSHAASQSMPSLH......TSSP..SSNSQEV..TANGdnVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.12|      34|      60|     554|     594|       4
---------------------------------------------------------------------------
  554-  594 (44.34/44.48)	KYVKVWEFFIMQgALSgqrqgQPVFITKLEGyRSASA.....SETL
  617-  655 (53.79/30.27)	QYVGKADFLVFR.ALN.....QHGFLGQLQE.KKLCAviqlpSQTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.58|      21|     291|      51|      72|       5
---------------------------------------------------------------------------
   51-   72 (35.11/28.17)	EFSLVVfNAHGSYSACLVQ.RSG
  344-  365 (33.47/21.12)	EFKPVV.NANVSILNTLSQvRSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.75|      35|      39|     114|     152|       6
---------------------------------------------------------------------------
  118-  152 (64.81/48.32)	ATQSVDGHNKHCI....LVAAS.NPYPLPTPVYRPK.IPKM
  154-  194 (43.94/21.72)	QGEDNEQSSESCLadaeTVAKSfSKCSLSLSVISPKqLPKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16079 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PSISSGGGTMIPTPGMSQQVQTGMQSNGGANSLATNMPMSQQASVGMQ
2) SGITNMPSNHSPIKMDTSAPPVSGPPPTTISSANGIHVNRQSVPVGNIPTATVKVEPNTVASMTSGTAFPHLPSVSHAASQSMPSLHTSSPSSNSQEVTANGDNVHE
3) VGALIGQGYVQGPSRSQLMSQGQIPSQAPSNMPGSGFLS
500
238
773
547
344
811










Molecular Recognition Features






MoRF SequenceStartStop




NANANA