<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16072

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQADMKLWPFKVIPGPGDKPMIVVTYKGEEKQFAAEEISSMVLVKMREIAEAFLGSSVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDIGGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELCMDLFRKCMDPVEKCLRDAKMDKSAIHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSQGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIDKMVQEAERYKSEDEQHKKKVEAKNALENYAYNMRNTIKDEKIGASLPADDKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGMGGMPGGMGGMPGGMDEDGPSVGGSGAGPKIEEVD
Length656
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.06
Grand average of hydropathy-0.372
Instability index34.56
Isoelectric point5.13
Molecular weight71543.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16072
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.04|      43|     189|     170|     216|       1
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  170-  216 (58.95/61.06)	GLNVLRIINePTaAAIAYGLDKKATSV.GEKNVLIFDLggGTFDVSLL
  362-  405 (69.09/51.52)	GKELCKSIN.PD.EAVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      38|      55|       2
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   16-   33 (19.07/ 9.88)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.65/21.60)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.28/14.38)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.29|      59|     397|     102|     167|       3
---------------------------------------------------------------------------
  102-  167 (84.51/61.46)	GDKPMIVVTykGEEKQFAAEEISSMVLVKMREIAEAFLGSS...VKNAVvtvPAY.FNdsQRQATKDA..GA
  502-  566 (86.78/46.38)	GQKNKITIT..NDKGRLSKEEIDKMVQEAERYKSEDEQHKKkveAKNAL...ENYaYN..MRNTIKDEkiGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.65|      75|     297|     280|     354|       4
---------------------------------------------------------------------------
  280-  354 (128.46/72.29)	LSSTAQTTIE..IDSLFEGIDFYTTITRARFEELCMDLFRKCMDPVEKCLRDAK..........MDKSAIHDIVLVGGSTRIPKVQQ
  568-  654 (118.18/65.99)	LPADDKKKIEdaIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGmggmpggmggMPGGMDEDGPSVGGSGAGPKIEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16072 with Med37 domain of Kingdom Viridiplantae
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