<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16065

Description Uncharacterized protein
SequenceMSSPAWSPRDTHSTTGITQQVSVSGPTATLISQTSAPSASCVDSQTLKSPSKNASVSFQEYCLANHSATHHHIAPPPSFSYGAVPKPISTSEISQEASSTPVMKSSPTASNAVIQPPGPGKSPGTGPSFSYNIVINNNVGSSAGQQFQSNTNASTAALREGGTCIVSSSGSQSLSVAAHSSLSSSSTAATPNLYPTTMWMPTPSFTAHPGMGGSPATPGPPGIHLSGPFCSNNTVRSMSPVMPFTATLPPNSVAQQIYPTFQSLPAMAPPPQAHWLQPPQIAGIQRPQYLQYPAMITNPFPLPVRGQPHPSFSLPDSQPPGISPLGPSGGTSLDSMGSVQHVRSSGMQSELPPPGTDYEKKADDNGGHITVSNEEAEAWTAHKTDTGAVYYYNAVTGESTYEQPHGYKGEPDKVTVQSTPVSWDKLGTTDWALVTTDDGKKYYYNNKTKVSSWQVPVEVTEWMKKRHEGDPLRANTMSMQNSSMLPEKGPVSISLNTPAINNGGRDATALRPSALPGSSSALDMIKKKLQDPGMPIASSPLPASSGPSTSDANGLRVVDATVKGPQDEDSKDKQKDANGGGNFSDSSSDSEDVDSGPTKEECIIKFKEMLKERRVAPFSKWEKELPKILFDPRFKAIPSHSARRSLFEHYVRTRAEEERKEKRAAQKAAVEGFRKLLEEASEDIDHKTDYQSFKEKWGSDPRFEALDRKEREVLLNERVLALRRAVEEKLQATRAAASSSFKSMLRDKSDITSNTRWSRVKDSLRSDPRYKSVRHEDRELLFNEYISELRAAEEEVYRATKAKREGQDKLKEREREMRKRKEREEEEVERASWTESKPKLEKDPQERALNPALEKSDLEKLFREHVKTLYERCARDFQALLAEVISTEAATQATEDGKSYLTSWSTAKRILKTDPRYSKMPRKDRESLWWRYAEEIQRKRKLASDPTDDRLNTEKGCRNSLESVRSPAESRRIRERR
Length977
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.06
Grand average of hydropathy-0.822
Instability index57.98
Isoelectric point8.65
Molecular weight107733.84
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16065
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     126.63|      19|      31|     248|     266|       1
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   75-   85 (21.03/ 6.23)	PP.......PSF.SYGA...VP
  203-  220 (24.85/ 8.72)	PSFTA...HPGMGGSPA.tpGP
  250-  268 (30.50/12.39)	PNSVAQQIYPTFQSLPA...MA
  278-  299 (24.82/ 8.70)	PPQIAGIQRPQYLQYPAmitNP
  301-  319 (25.43/ 9.09)	PLPVRGQPHPSF.SLPD..sQP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     210.10|      28|      29|     788|     815|       2
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  654-  681 (22.28/ 8.58)	..RA....EEE......rkEKRAAQKAAV......EGFRKLLE..E.....AS
  682-  718 (18.94/ 6.14)	E.DI....DHK........TDYQSFKEKWgsdprfEALDR.KE..RevllnER
  721-  742 (19.21/ 6.34)	ALRR....AVE........EKLQATRAAA......SSSFK.............
  745-  769 (26.72/11.81)	.LR.....DKS........DITSNTRWSR.......VKDSLRS..D.....PR
  788-  815 (45.89/25.77)	ELRA....AEE........EVYRATKAKR......EGQDKLKE..R.....ER
  816-  847 (26.84/11.90)	EMRKrkerEEE........EVERASWT........ESKPKLEKdpQ.....ER
  920-  955 (25.73/11.09)	MPRK....DREslwwryaeEIQRKRKLAS......DPTDDRLN..T.....EK
  956-  976 (24.50/10.20)	GCRN....SLE........SVRSPAESRR.............I..R.....ER
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.34|      26|      49|     379|     404|       3
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  379-  404 (50.41/34.03)	WTAHKTDTGAVYYYNAVTGESTYEQP
  431-  456 (49.93/33.63)	WALVTTDDGKKYYYNNKTKVSSWQVP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.32|      20|      98|     221|     241|       4
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  221-  241 (35.93/19.38)	PGIHLSGPfCSNNTVRSMSPV
  320-  339 (37.39/16.40)	PGISPLGP.SGGTSLDSMGSV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.76|      20|      24|     533|     554|       5
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  535-  554 (36.10/20.72)	PIASS....PLPASSGPSTSDANG
  556-  579 (26.67/ 7.49)	RVVDAtvkgPQDEDSKDKQKDANG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.93|      16|      78|      13|      28|       6
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   13-   28 (29.03/17.29)	STTGITQQVSV.....SGPTA
   89-  109 (21.90/11.05)	STSEISQEASStpvmkSSPTA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.05|      23|      25|     141|     163|       8
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   49-   68 (17.80/ 6.16)	SPSKNasvSFQEYCLANHSA......
  141-  163 (37.47/21.27)	SSAGQ...QFQSNTNASTAALREGGT
  167-  187 (32.78/17.67)	SSSGS.....QSLSVAAHSSLSSSST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16065 with Med35 domain of Kingdom Viridiplantae
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