<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16064

Description Uncharacterized protein
SequenceMSSPAWSPRDTHSTTGITQQVSVSGPTATLISQTSAPSASCVDSQTLKSPSKNASVSFQEYCLANHSATHHHIAPPPSFSYGAVPKPISTSEISQEASSTPVMKSSPTASNAVIQPPGPGKSPGTGPSFSYNIVINNNVGSSAGQQFQSNTNASTAALREGGTCIVSSSGSQSLSVAAHSSLSSSSTAATPNLYPTTMWMPTPSFTAHPGMGGSPATPGPPGIHLSGPFCSNNTVRSMSPVMPFTATLPPNSVAQQIYPTFQSLPAMAPPPQAHWLQPPQIAGIQRPQYLQYPAMITNPFPLPVRGQPHPSFSLPDSQPPGISPLGPSGGTSLDSMGSVQHVRSSGMQSELPPPGTDYEKKADDNGGHITVSNEEAEAWTAHKTDTGAVYYYNAVTGESTYEQPHGYKGEPDKVTVQSTPVSWDKLGTTDWALVTTDDGKKYYYNNKTKVSSWQVPVEVTEWMKKRHEGDPLRANTMSMQNSSMLPEKGPVSISLNTPAINNGGRDATALRPSALPGSSSALDMIKKKLQDPGMPIASSPLPASSGPSTSDANGLRVVDATVKGPQDEDSKDKQKDANGGGNFSDSSSDSEDVDSGPTKEECIIKFKEMLKERRVAPFSKWEKELPKILFDPRFKAIPSHSARRSLFEHYVRTRAEEERKEKRAAQKAAVEGFRKLLEEASEDIDHKTDYQSFKEKWGSDPRFEALDRKEREVLLNERVLALRRAVEEKLQATRAAASSSFKSMLRDKSDITSNTRWSRVKDSLRSDPRYKSVRHEDRELLFNEYISELRAAEEEVYRATKAKREGQDKLKEREREMRKRKEREEEEVERVRTKVRRNEALSSYQALLVETIKDPQASWTESKPKLEKDPQERALNPALEKSDLEKLFREHVKTLYERCARDFQALLAEVISTEAATQATEDGKSYLTSWSTAKRILKTDPRYSKMPRKDRESLWWRYAEEIQRKRKLASDPTDDRLNTEKGCRNSLESVRSPAESRRIRERR
Length1003
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.06
Grand average of hydropathy-0.816
Instability index57.64
Isoelectric point8.78
Molecular weight110731.25
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16064
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     514.58|      97|     100|     123|     222|       1
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   17-  124 (89.43/37.67)	.........ITQQV...SvSGPTATLISQTSAPSASCVDSQT.LKSPSKNASVSfqeycLANHSAThhhiappPSFSY....GAVPK...PISTSE.....I.......SQEASSTPVMKSS....P.TAsnaviqpP..G......PgksPG
  126-  222 (167.29/75.43)	GPSFSYNIVINNNV...G.SSAGQQFQSNTNASTAALREGGTCIVSSSGSQSLS.....VAAHSSL.......SSSST....AATPN.LYPTTMWM.....P.......TPSFTAHPGMGGS....P.AT.......P..G......P...PG
  235-  308 (76.36/34.44)	VRSMSPVM................PF..............TATLPPNSVAQQI.........YPTF.......QSLPA....MAPP....PQAHWL....qPpqiagiqRPQYLQYPAMITN....PfPL.......PvrG......Q...P.
  309-  406 (95.28/38.62)	HPSFSLPDSQPPGIsplG.PSGGTSLDS........M..GSVQHVRSSGMQS............EL.......PPPGTdyekKADDNgGHITVSNE.....E.......AEAWTAHKTDTGAvyyyN.AV.......T..GestyeqP...HG
  409-  490 (86.22/36.03)	.................G.EPDKVTVQS.TPVSWDKLGTTDWALVTTDDGKKYY.....YNNKTKV.......SSWQV....PV......EVTEWMkkrheG.......DPLRANTMSMQNS....S.ML.......PekG......P.....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     469.99|      66|      66|     668|     733|       2
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  560-  614 (37.36/13.26)	.....ATVKG........PQD.EDSKdkqkdangggnfSDSSSDSEDVDSGPT....KEEC.IIKFKE.MLKE......RR......
  615-  660 (55.40/22.77)	.......VAPFSKW.EKELPK.ILF.........................DPR....FKAIpSHSARRSLFEHYV.RT..RAEEERK
  663-  730 (100.93/46.79)	RAAqkAAVEGFRKLLEEASED.IDHK............TDYQSFKEKWGSDPR....FEAL.DRKEREVLLNERV.LALRRAVEEKL
  731-  797 (93.29/42.76)	QATraAASSSFKSMLRDKS.D.ITSN............TRWSRVKDSLRSDPR....YKSV.RHEDRELLFNEYI.SELRAAEEEVY
  798-  839 (42.22/15.82)	RAT.kAKREGQDKL..............................KER....ER.....EMR.KRKEREEEEVERVrTKVRR..NE..
  840-  903 (68.37/29.61)	......ALSSYQALLVETIK...DPQ............ASWTESKPKLEKDPQeralNPAL.EKSDLEKLFREHV.KTLYERCARDF
  904-  962 (72.42/31.75)	QALlaEVIST..EAATQATEDgKSYL............TSWSTAKRILKTDPR....YSKM.PRKDRESLW.......WRYA..EEI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.19|      14|      42|     498|     511|       3
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  498-  511 (22.15/11.67)	PAINNGGRDATALR
  543-  556 (21.04/10.70)	ASSGPSTSDANGLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16064 with Med35 domain of Kingdom Viridiplantae
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