<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16051

Description Uncharacterized protein
SequenceMTSASPKEEEHQQVKKEEVIDSFAAETVIISDTNVSEQIKEEKQQQEEKKQEDLMEEDDSMPTTTTSTSSSTVFQIRLKQPQSNLLYKMSVPKLCRNFSATAWCAKLNAIACASETCARIPSSSAHPPFWIPIHIVNPERPTECAVFNVTADSPRDSVQFIEWSPSSCTRALLVANFHGRITIWTQPSKSSTCLAKDFSCWQCEHEWRQDIAVVTKWMSGISPYSWVSSNSGGPSYSKFTFEERFFSQRPQSSARWPNFLCVCSVFSSGSVQLHWAKWPLSHSAEAPKWFSTSKGLLGAGPSGIMAGDAIITEAGTMHVAGVPLVNPSTVVVWEVTPGPGNGFQGTALINTSNGVPPSLDPPRWTGYSRLAAYLFSWQEFMGSEIKEGKKQTDLGSSETVSLHCSPVSNFSAYVSPEAAAQSAAATTWGSGVTTVAFDPTQGGSVISVIIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFENAASSLGGQTPMQTVWVTRVNKTIPPMKECLQDVVSLSASCDKQSTFDPHAKKAKRLSFDFLDLPSDIRTLARIVYSAHGGEVAVSFLNGGVHIFSGASFTPVDSYVGNVTSAIAAPSFSSTGCCLASVWHDTNKDCTTVKITRVLPNIKLKMNSAIWERAIADRFWWSLVVGVDWWDAVGCTQSAAEDGIVSLNSLIAVLDADFHSLSSAHHRQQYRPSLDRIKCRLLEGTSAQEVRALVLDMQARLLLDMLGNGIESALINPATLVSEPWPTSGEMLSGIDPDAMTVEPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGTTAGVGSGRNMVTSSAHSSESPPTNQGGQSGTTSSSGSSQMQAWVQGAIAKISSTTDGVSNSPPNPRNGPSTFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYIFWRRQMPRYSASAQKDLTRKEPNTVSTRPASAMKSEEAQATRNGQGVKGGEEGSGKVAPRLGSGNAGHGYTHEEVKVLFLITVELCRRTAGLAHPFPVSQVGGSNIQICLHYIDGNYTVLPEVVEASLGPFMQEYLKLDLIHKLKYKKDVYELTKGILCLVIISLDLQLLNDWEMDNMPRPRGADAAGLLLRELDLHPPAEEWHRRNMLGGPWSDTEDLGPLDDSLKLSTCDLLEFNLLNDYDSSCLPRGLWPRKRRFSERDAAFGLKSSVGLGPYLGLMGSRRDVLTAVWKKGLEGVWYKV
Length1232
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.08
Grand average of hydropathy-0.191
Instability index46.46
Isoelectric point6.07
Molecular weight134438.71
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16051
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.30|      61|     124|     267|     390|       1
---------------------------------------------------------------------------
  267-  344 (87.82/86.67)	SSGSVQLHWAkwPLS............HSAEAPKWfstskgllgaGpSGI..MAGDAiiTEAGTmhVAGVPLVNPSTVVVWEVTPGPG.NGFQ
  396-  471 (93.48/78.10)	SSETVSLHCS..PVSnfsayvspeaaaQSAAATTW..........G.SGVttVAFDP..TQGGS..VISVIIVEGQYMSPYDPDEGPSiTGWR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.67|      17|      24|     740|     758|       2
---------------------------------------------------------------------------
  740-  758 (22.12/22.44)	DMLgNGIE.SAL.INPAtLVS
  766-  784 (22.55/12.13)	EML.SGIDpDAMtVEPA.LVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.39|      17|      30|     820|     849|       4
---------------------------------------------------------------------------
  820-  847 (24.31/34.49)	GTTagvgsgrnmvtSSAHSSESPPTNQG
  851-  867 (33.07/13.07)	GTT...........SSSGSSQMQAWVQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.87|      22|      22|     872|     893|       5
---------------------------------------------------------------------------
  872-  893 (40.15/20.78)	ISSTTDGVSNSPPNPRNGPSTF
  896-  917 (40.72/21.18)	ISINTGTFPGTPAVRLIGDCHF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.53|      16|      66|    1095|    1110|       7
---------------------------------------------------------------------------
 1095- 1110 (31.95/18.29)	LDLQ.LLNDWEMDNMPR
 1124- 1138 (16.83/ 6.36)	LDLHpPAEEWHRRNM..
 1164- 1179 (27.75/14.98)	LEFN.LLNDYDSSCLPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.70|      15|      22|     704|     718|       8
---------------------------------------------------------------------------
  704-  718 (27.02/18.95)	QQYRPSLDRIKCRLL
  724-  738 (23.68/15.70)	QEVRALVLDMQARLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.13|      18|      32|       3|      20|      12
---------------------------------------------------------------------------
    3-   20 (30.30/19.90)	SASPKEEEHQQ..VKKEEVI
   36-   55 (25.84/16.00)	SEQIKEEKQQQeeKKQEDLM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16051 with Med16 domain of Kingdom Viridiplantae
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