<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16048
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKIGGLHQISWFQFLPSESDLNPLPDKSVKAEQKDAATLLVLLSHLQLQKEGFLSTWTNSFVGPWDPSQGMHNPDEKIKLWLFIPGRHSSVLETAQSAVSRLRVVGSGLWVAPGDSEEVAVALSQALRNCIERALRGISYMRYGDVFTRCYPFSQSGKQSRRVQPTVEFIFAATEEALFVHVIISAKHIRSLSRDDMEKILRRCSPRKHGERLPVIVAPHGMRGQLSGCCPSDLVKQVYLSSSKVKASNGFTVVNIPSNVAQASGCQLRGQNCHVEVTLGCPGTGDKAVHLNSNFIWNKPNHHSTESPMVALDRDDQKHGSTDYYRVSERTFIYPAEAVVVPVMQTTFARSSLKRFWLQNWAGAALFGSCFLTNCSGFGRVGSSESMYQPWIDSNGIRSQNSSSNSNNSSVSGITGSSSGSDYQMISGAGDLEADADSFTCRQSGLSSNDQLENDDNKQVCKRARKGTSESFNGAGTVLNTDIEVKTSIVGAVNDQVGSLWDWDAEERVELDIQILLSDFGDFGDFFPPGTDESQAIVYSVLDCGDVNGSPCAGAMDVTDQMLLPALEFPSFDSINPLPLVVTDESQSKQQELEKDTWSSALGSYSSALSAGEFDTLSKAEAMMTFAPEYTAVEAPPNELLAQTFRSPYLPVSRKVERSNFSSSAYAYGATPPSSCLTFPDQNPSMSQNIKTCPAGLESSHAMNYKKCYTHVTMEKEIDGKLIDCNNNIASSEGLRPSSSFSGYNSINTVKSLKRKRAEENTEPRNILLSLEIVIASEVECIMFQASMCRIRHMPSLSSNLLSSVPSNFTGNSALEHPRGDNLTISDKTSSRYDVKKKESIPVRIAGDVDVGMLDGSFNAPVGVWRSVGVPKGAKPTSSSSIDNAPSFHNNSFNEESRHMYGQRQPLQELLNAMTLLVQQATSFVDVALDAEYGDGPFGWLALEEQSRRGFSCGPSMVHAGCGGVLATCHSLDIAGVELLDPLSSNVHASSVISLLHSDIKVALKSAFGNLDGPLLVTDWCKGRNQLSDTGNPNDVYSGESATGDAKDSLSAVTLAAGEPMSPTNSSGGSSCLKDGVRVDETTQRRLNQEIGSSESDQQLNSSRLRPTLLLLPMPAILVGYQDDWLKTSTSSLQLWEKAPLEPYAAPKPTTYYVVCPDIDPLASAAADFFQQLGTVYETCKLGTHTPQNMGAQTDLLSGKWASSGFVMIDCPQSMKMESGKASIMGSISDYLLALSNAWDVRSFLKSLSNVIKALRLGPNSTTNPKEGSSGPGMVIYVVCPFPEPVAVLQTVIESSTALGSTIVSSDKERRSLLHNQVARALSCSVAVDEASLSNILTISGFSIPKLVLQIVTVEAILRVTSPALNELVLLKEIAFTVYNKSRRLARVSNNDVVQSPGVSVRPQSTMMHMASPISGMWKDCIAPRITGSLPREGELDTSLRGGTWENSWQAARTGGLSCDQNRLGDKICQDDVRYLFEPLFVLAEPGSVEQGVSPMMVSNAMVDSPRPAVDDGSSGGFVQCSTSVGADIGPSSLHEGSESDGCGHSHPKTTSLHCCYGWTEDWRWLVCVWTDSRGEFLDSQIFPFGGIGSRQDTKGLQCLFVQVLHQGCQILSCSSPDAGSIKPRDIIITRIGSFYELERQEWQKAIYLVGGNEVKKWPLQLRRSVPDGISASNGNSLHQQGMSLIQDRTLSSSPNPSMYSPQTKASGYIKGGLGQMNARKTGGQAAVDNSRGLFLWVRSISLIGVSVDHSLHLILQADTPLSGGGAQGAAATGPVGYLEGFSPVKSLGSTSASYILIPSPSMHFLPPKPLQLPTCLTSDSPPLAHLLHSKGSAIPLSTGFVVSKAVPSIQKDTRSSMKEEWPSILSVSLVDYYGSSNIPQEKIARGSIKHARSINSDARDHEIETHLILESVAAELHALSWMTASPAYLERRTALPFHCDMILRLRRLIHYADKEICQKPDKVQM |
Length | 1971 |
Position | Kinase |
Organism | Aquilegia coerulea (Rocky mountain columbine) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae>
Aquilegia.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.231 |
Instability index | 49.90 |
Isoelectric point | 5.79 |
Molecular weight | 213592.64 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP16048
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 389.50| 127| 548| 828| 1075| 1
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909- 1075 (189.49/32.66) RQPLQELLNAMTLLVQQAtsFVDVALDAeYGDGPFGWLaLEEQSRRGFSCGPSMVHA.....GCGgvlatchsldiagvelldplssnvhassvisllHSDIK.VALKSAFG.NLDGPLLVTDWCKGRNQLSDTGN.PndvYSGESATGDAK..DSLSAVTLAAG.EPMSPTNSSGGS
1489- 1626 (200.02/135.59) AEPGSVEQGVSPMMVSNA..MVDSPRPA.VDDGSSGGF.VQCSTSVGADIGPSSLHEgsesdGCG.................................HSHPKtTSLHCCYGwTEDWRWLVCVWTDSRGEFLDSQIfP...FGGIGSRQDTKglQCLFVQVLHQGcQILSCSSPDAGS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 325.69| 77| 552| 194| 277| 2
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194- 273 (129.11/78.59) IRSLSRDDMEKilrRCSPRKHGERLPVIVAP..HGMRGQLSGCCPSD...LVKQVYLSSSKVKASNGFTVVN.IPSNVAQASGCQL
755- 822 (100.02/53.10) VKSLKRKRAEE...NTEPRNILLSLEIVIASevECIMFQASMC.......RIRHMPSLSSNLLSS........VPSNFTGNSALEH
1186- 1225 (44.80/19.13) ......................................KLGTHTPQN...MGAQTDLLSGK.WASSGFVMID.CPQSMKMESG...
1805- 1854 (51.75/23.63) ................SPSMH..FLP....P..KPL..QLPTCLTSDsppLAHLLHSKGSAIPLSTGFVVSKaVPS..........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.23| 21| 551| 20| 40| 3
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20- 40 (38.42/24.96) LPSESDLNPLP....DKSVKAEQ...KD
574- 601 (29.81/17.39) FPSFDSINPLPlvvtDESQSKQQeleKD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.81| 26| 550| 828| 881| 4
---------------------------------------------------------------------------
843- 870 (43.50/64.77) KESIPVRIAGDVD.VGMLDGSFNApvGVW
1424- 1450 (45.31/11.46) KDCIAPRITGSLPrEGELDTSLRG..GTW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.97| 22| 45| 433| 456| 5
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433- 456 (30.50/28.39) GAGD.LEADADSFTcRQSGlSSNDQ
479- 501 (33.47/19.68) GAGTvLNTDIEVKT.SIVG.AVNDQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.39| 23| 122| 1145| 1168| 6
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1145- 1168 (42.16/30.84) PLEPYAAPkPTTYYVVCPDIDPLA
1270- 1292 (46.23/29.27) PKEGSSGP.GMVIYVVCPFPEPVA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.12| 22| 319| 410| 431| 7
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410- 431 (39.98/26.02) NSNNSSVSGITGSSSGSDYQMI
731- 752 (40.14/26.15) NNNIASSEGLRPSSSFSGYNSI
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