<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16047
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKIGGLHQISWFQFLPSESDLNPLPDKSVKAEQKDAATLLVLLSHLQLQKEGFLSTWTNSFVGPWDPSQGMHNPDEKIKLWLFIPGRHSSVLETAQSAVSRLRVVGSGLWVAPGDSEEVAVALSQALRNCIERALRGISYMRYGDVFTRCYPFSQSGKQSRRVQPTVEFIFAATEEALFVHVIISAKHIRSLSRDDMEKILRRCSPRKHGERLPVIVAPHGMRGQLSGCCPSDLVKQVYLSSSKVKASNGFTVVNIPSNVAQASGCQLRGQNCHVEVTLGCPGTGDKAVHLNSNFIWNKPNHHSTESPMVALDRDDQKHGSTDYYRVSERTFIYPAEAVVVPVMQTTFARSSLKRFWLQNWAGAALFGSCFLTNCSGFGRVGSSESMYQPWIDSNGIRSQNSSSNSNNSSVSGITGSSSGSDYQMISGAGDLEADADSFTCRQSGLSSNDQLENDDNKQVCKRARKGTSESFNGAGTVLNTDIEVKTSIVGAVNDQVGSLWDWDAEERVELDIQILLSDFGDFGDFFVSDTLPFGEPPGTDESQAIVYSVLDCGDVNGSPCAGAMDVTDQMLLPALEFPSFDSINPLPLVVTDESQSKQQELEKDTWSSALGSYSSALSAGEFDTLSKAEAMMTFAPEYTAVEAPPNELLAQTFRSPYLPVSRKVERSNFSSSAYAYGATPPSSCLTFPDQNPSMSQNIKTCPAGLESSHAMNYKKCYTHVTMEKEIDGKLIDCNNNIASSEGLRPSSSFSGYNSINTVKSLKRKRAEENTEPRNILLSLEIVIASEVECIMFQASMCRIRHMPSLSSNLLSSVPSNFTGNSALEHPRGDNLTISDKTSSRYDVKKKESIPVRIAGDVDVGMLDGSFNAPVGVWRSVGVPKGAKPTSSSSIDNAPSFHNNSFNEESRHMYGQRQPLQELLNAMTLLVQQATSFVDVALDAEYGDGPFGWLALEEQSRRGFSCGPSMVHAGCGGVLATCHSLDIAGVELLDPLSSNVHASSVISLLHSDIKVALKSAFGNLDGPLLVTDWCKGRNQLSDTGNPNDVYSGESATGDAKDSLSAVTLAAGEPMSPTNSSGGSSCLKDGVRVDETTQRRLNQEIGSSESDQQLNSSRLRPTLLLLPMPAILVGYQDDWLKTSTSSLQLWEKAPLEPYAAPKPTTYYVVCPDIDPLASAAADFFQQLGTVYETCKLGTHTPQNMGAQTDLLSGKWASSGFVMIDCPQSMKMESGKASIMGSISDYLLALSNAWDVRSFLKSLSNVIKALRLGPNSTTNPKEGSSGPGMVIYVVCPFPEPVAVLQTVIESSTALGSTIVSSDKERRSLLHNQVARALSCSVAVDEASLSNILTISGFSIPKLVLQIVTVEAILRVTSPALNELVLLKEIAFTVYNKSRRLARVSNNDVVQSPGVSVRPQSTMMHMASPISGMWKDCIAPRITGSLPREGELDTSLRGGTWENSWQAARTGGLSCDQNRLGDKICQDDVRYLFEPLFVLAEPGSVEQGVSPMMVSNAMVDSPRPAVDDGSSGGFVQCSTSVGADIGPSSLHEGSESDGCGHSHPKTTSLHCCYGWTEDWRWLVCVWTDSRGEFLDSQIFPFGGIGSRQDTKGLQCLFVQVLHQGCQILSCSSPDAGSIKPRDIIITRIGSFYELERQEWQKAIYLVGGNEVKKWPLQLRRSVPDGISASNGNSLHQQGMSLIQDRTLSSSPNPSMYSPQTKASGYIKGGLGQMNARKTGGQAAVDNSRGLFLWVRSISLIGVSVDHSLHLILQADTPLSGGGAQGAAATGPVGYLEGFSPVKSLGSTSASYILIPSPSMHFLPPKPLQLPTCLTSDSPPLAHLLHSKGSAIPLSTGFVVSKAVPSIQKDTRSSMKEEWPSILSVSLVDYYGSSNIPQEKIARGSIKHARSINSDARDHEIETHLILESVAAELHALSWMTASPAYLERRTALPFHCDMILRLRRLIHYADKEICQKPDKVQM |
Length | 1980 |
Position | Kinase |
Organism | Aquilegia coerulea (Rocky mountain columbine) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae>
Aquilegia.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.230 |
Instability index | 49.80 |
Isoelectric point | 5.74 |
Molecular weight | 214538.65 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP16047
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 426.18| 140| 151| 1622| 1771| 1
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1621- 1770 (219.32/108.65) QGCQILSCSSPD.AGSIKPrdiiITRIGSFYELERQEWQKAIY.LVGGNEVK...KWPLQLRRSVPDGiSASNGNSLHQQGMSL.IQDRTLSSSPNPSMySPQTKAS......GYIKGGLGQMNARKTGGQAAVdnSRGLFLWVRSISliGVSVDHSL..HLIL
1771- 1924 (206.87/84.53) QADTPLSGGGAQgAAATGP....VGYLEGFSPVKSLGSTSASYiLIPSPSMHflpPKPLQLPTCLTSD.SPPLAHLLHSKGSAIpLSTGFVVSKAVPSI.QKDTRSSmkeewpSILSVSLVDYYGSSNIPQEKI..ARGSIKHARSIN..SDARDHEIetHLIL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.66| 20| 151| 372| 391| 2
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372- 391 (39.21/21.86) FGSCFLTNCSGFGRV.GSSES
528- 548 (34.45/18.25) FGDFFVSDTLPFGEPpGTDES
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 132.45| 42| 158| 1013| 1087| 3
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593- 637 (66.56/18.63) PLVVTDESQSKQQELE....KDTWS..SALGSYSSALSAgefDTLSKAEAM
1028- 1075 (65.89/67.44) PLLVTDWCKGRNQLSDtgnpNDVYSgeSATGDAKDSLSA...VTLAAGEPM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 123.98| 27| 309| 1217| 1244| 6
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253- 275 (34.30/14.51) SNGFTVVNIPSNVAQASG.CQLR.G...
1217- 1243 (49.10/25.78) SSGFVMIDCPQSMKMESGKASIM.GSIS
1529- 1554 (40.58/19.29) SGGFV..QCSTSVGADIGPSSLHeGSES
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 78.14| 24| 159| 174| 199| 8
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174- 199 (35.94/30.78) FIFAAteEALFVHVIISAKHIRSLSR
337- 360 (42.20/29.16) FIYPA..EAVVVPVMQTTFARSSLKR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 118.03| 26| 315| 410| 438| 10
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410- 435 (46.03/25.21) NSNNSSVSGITGSSSGSDYQMISGAG
459- 481 (38.15/20.20) NDDNKQVC..KRARKGTS.ESFNGAG
740- 762 (33.84/13.70) NNNIASSEGLRPSSSFSGYNSIN...
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 153.22| 53| 315| 950| 1018| 11
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950- 1018 (68.94/69.51) GPfgwlALEEQSRRGfSCGPSMVhagcggVLATCHSLDIAGV.....ElldplSSNVHASSVI.......SLLHSDIKVAL
1272- 1336 (84.28/43.76) GP....NSTTNPKEG.SSGPGMV......IYVVCPFPEPVAVlqtviE.....SSTALGSTIVssdkerrSLLHNQVARAL
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