<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16041

Description Uncharacterized protein
SequenceMDNNNNSIHVKGGNDDNKDWRTRFSSDSRRKVTNEIMETLKRHLPEPSLNVLREVKQIAESFEEKVFSAATSQDDYVLQVNMHLVNLENRSHTCGEVNILPSTSSCGDLNSPDSASQGLQSQFYSEALSPPICLAHSSQAQEKVSSHNNPTISDSSGVQSPSLSPAPSGASHTKNIVVNCEGQSHNFEDMSEKSVGCSALQSVSSDILSSFQGQMEGKQHRQQNVVQQQFQNVQQYIFQKQLPKQVLQGHQSSQNTLQQAQPSSVQSSSNSDNQQNQQSSAQNLPLIALQQQPQRSIQQQKHQFTQQSMFSSHQNQQLIQKSSDETNRQYVCNYSDMQPQQVENQQLFAGEQNNFSRIQQKLQVLGQQNDVSGFLQHSTITLQQAKIVEEQQKAHQTSSASFLPHQQQSQSRLSQQQVMSHLQTHQFQQQLGSQITSKPLRSDMNQMVHPSSSLVQLQNIIEHQKQLFQCPIRPEASYSLASNGQTNASDGREVIFQKLQSMKKMYLPLLIQVYKKLQTSQTVLNDKSQRAKIWLERTLRMLDASLSNIPRDLTVDKLLPMERQIVDFIRATRLRRNVGPQQQGQQQTQAQMQHTDNQMKTLMQAKNLKNAMTAVQSSAVVTSQHDFIPSLSSHMGVPGLQPNLMNTLQSSSHSQLHSVLGSALHSSQQAVVGSLQKIPMNATQQARNSLCSQNDMDAWKPKVTSLKENSNALQYHLKQQSQPRQMSHQDVQHQQVQQIIQQNHQNPLQQNPLQRKLQQSTELLGQQIPHLYQMNEVSNMQSKQSLNVDLGVLHQHQTPGRQSAYNEQSSKSGDVSYMSSPHPLQSSFPYTSQYSSPQTDQLSMISLSKSGISMQPESSPILSLSPSNSLTPPPILADHEKQASSISLHSNAGNCKQMQTVTSGPQPPSLVISTPGISASSLLTEFASPVNIQASAASIISSKTIATEKPIEHLIRVVKSMSHKALSASVSDIDSAVTMVHRMASSKPGNHSKDAIGEDLVATVKHRAVVNNFSPDNGIITSENMKYHTYGTPLRLVSSDGSVNDRFKPCNGMEKSDLESTATSRIKRPRVEFPVLTMCLLVSSDYPKCSPVFLDKLPLELSKEHKYMLLKAGSQFMRSIRCLPQPITVTKMARSWDTCAHAVILEYAVQNGGGSFSTRYGTWRTVSTS
Length1169
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.04
Grand average of hydropathy-0.658
Instability index62.81
Isoelectric point8.95
Molecular weight130060.25
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16041
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     808.52|     115|     115|     234|     348|       1
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   25-  103 (38.71/ 7.17)	.....................................................................SSDS.RRKvTNEimETL...KRHL..PEP..SL.....NV.LRE...............VKQIAESF.EE..K...............VFSaaTS....QD.......D.YVLQVNmhlVNLEN.RS....HTCG.EVNILPST.......
  112-  230 (88.58/25.94)	.............................PDSASQGLQS........QFYSEALS.....PP..ICLAHSS.....Q.AQE..KVS...SHNN..PTI..SDSsgvQSP.SLSpapsgashtknivvnCEGQSHNFEDM..SeksvgcsalqsvssdILS..SF....QG.......Q.M........EGKQH.RQ...............QNVVQQQ.F
  234-  348 (197.57/66.99)	QQY................I...FQK.QLPKQVLQGHQS........SQNTLQQA.....QP..SSVQSSSNS.DNQ.QNQ..QSS...AQNL..PLI..ALQ...QQP.QRS...............IQQQKHQFTQQ..S...............MFS..SH....QN.......Q.QLIQKS...SDETN.RQ....YVCN.YSDMQPQQVENQQLF
  351-  468 (109.72/33.90)	EQN................N...FSRiQQKLQVL.GQQNdvsgflqhSTITLQQAkiveeQQ..KAHQTSSAS.FLP.HQQ..QSQ...SR..........LS...QQ..QVM...............SHLQTHQFQQQlgS...............QIT..SKplrsDM.......N.QMVHPS...SSLVQ.LQ....NIIE.H.........QKQLF
  476-  566 (45.97/ 9.90)	ASYslasngqtnasdgrevI...FQK.......LQSMKK........MYLPLLIQ.....VY..KKLQTSQTV.LND.KSQ..RAKiwlERTL..RMLdaSLS...NIP........................RDLTVD..K...............LLP........ME.......R.QIV......................................
  568-  665 (116.67/36.52)	..F................I...RAT.RLRRNVGPQQQG........QQQT..QA.....Q.....MQ...HT.DNQ.MKT..LMQ...AKNLknAMT..AVQ...SS....A...............VVTSQHDFIPS...................LS..SH....MG.......V.PGLQ.....PNLMN.T......LQS.SSHSQLHSVLGSALH
  668-  791 (100.86/30.57)	QQA................VvgsLQK..IPMNATQQARN.....slcSQNDMDAW.....KPkvTSLKENSNAlQYH.LKQ..QS......................QPrQMS...............HQDVQHQQVQQ..I...............IQQ..NH....QNplqqnplQ.RKLQQS...TELLG.QQiphlYQMNeVSNMQSKQSLNVDLG
  801-  907 (110.44/34.18)	RQS................A...YNE.QSSKSGDVSYMS........SPHPLQSS.....FP..YTSQYSS.....P.QTD..QLS...MISL..SKS..GIS...MQP.ESS............pilSLSPSNSLTPP..P...............ILA..DH....EK.......QaSSISLH...SNAGNcKQ....MQTV.TSGPQP.........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.72|      18|      42|    1036|    1059|       2
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 1036- 1059 (28.58/28.62)	LVSSDgsvndrFKPCNG..MEKSDLE
 1081- 1100 (27.15/14.14)	LVSSD......YPKCSPvfLDKLPLE
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.93|      33|      41|     927|     965|       3
---------------------------------------------------------------------------
  927-  965 (41.40/43.06)	ASPVNIQaSAASIIssKTIATEKPIEH........LIRVVKsmsHKA
  968- 1008 (50.53/31.17)	ASVSDID.SAVTMV..HRMASSKPGNHskdaigedLVATVK...HRA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16041 with Med15 domain of Kingdom Viridiplantae
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