<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16039

Description Uncharacterized protein
SequenceMDNNNNSIHVKGGNDDNKDWRTRFSSDSRRKVTNEIMETLKRHLPEPSLNVLREVKQIAESFEEKVFSAATSQDDYVLQVNMHLVNLENRSHTCGEVNILPSTSSCGDLNSPDSASQGLQSQFYSEALSPPICLAHSSQAQEKVSSHNNPTISDSSGVQSPSLSPAPSGASHTKNIVVNCEGQSHNFEDMSEKSVGCSALQSVSSDILSSFQGQMEGKQHRQQNVVQQQFQNVQQYIFQKQLPKQVLQGHQSSQNTLQQAQPSSVQSSSNSDNQQNQQSSAQNLPLIALQQQPQRSIQQQKHQFTQQSMFSSHQNQQLIQKSSDETNRQYVCNYSDMQPQQVENQQLFAGEQNNFSRIQQKLQVLGQQNDVSGFLQHSTITLQQAKIVEEQQKAHQTSSASFLPHQQQSQSRLSQQQVMSHLQTHQFQQQLGSQITSKPLRSDMNQMVHPSSSLVQLQNIIEHQKQLFQCPIRPEASYSLASNGQTNASDGREVIFQKLQSMKKMYLPLLIQVYKKLQTSQTVLNDKSQRAKIWLERTLRMLDASLSNIPRDLTVDKLLPMERQIVDFIRATRLRRNVGPQQQGQQQTQAQMQHTDNQMKTLMQAKNLKNAMTAVQSSAVVTSQHDFIPSLSSHMGVPGLQPNLMNTLQSSSHSQLHSVLGSALHSSQQAVVGSLQKIPMNATQQARNSLCSQNDMDAWKPKVTSLKENSNALQYHLKQQSQPRQMSHQDVQHQQVQQIIQQNHQNPLQQNPLQRKLQQSTELLGQQIPHLYQMNEVSNMQSKQSLNVDLGVLHQHQTPGRQSAYNEQSSKSGDVSYMSSPHPLQSSFPYTSQYSSPQTDQLSMISLSKSGISMQPESSPILSLSPSNSLTPPPILADHEKQASSISLHSNAGNCKQMQTVTSGPQPPSLVISTPGISASSLLTEFASPVNIQASAASIISSKTIATEKPIEHLIRVVKSMSHKALSASVSDIDSAVTMVHRMASSKPGNHSKDAIGEDLVATVKHRAVVNNFSPDNGIITSENMKYHTYGTPLRLVSSDGSVNDRFKPCNGMEKSDLESTATSRIKRPRVEV
Length1073
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.04
Grand average of hydropathy-0.715
Instability index63.79
Isoelectric point8.81
Molecular weight119284.74
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16039
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     185.04|      37|      37|     112|     148|       1
---------------------------------------------------------------------------
  112-  142 (43.35/12.09)	............P.....D.SASQGLQS.QFYSEALSP.PICLAH...SSQ..AQE
  143-  180 (32.90/ 7.28)	KVSSHN.....nP.....TiSDSSGVQ.....SPSLSPaPSGASH...TKNivVNC
  278-  317 (40.26/10.67)	QSSAQN.....lP.lialQ.QQP..QRSiQQQKHQFTQ.QSMFS....SHQ..NQQ
  404-  429 (30.60/ 6.22)	......................PHQQQS.Q...SRLSQ.QQVMSH.lqTHQ..FQQ
  689-  737 (37.93/ 9.60)	SLCSQNdmdawkPkvtslK.ENSNALQ..YHLKQQ.SQ.PRQMSHqdvQHQ..QVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.15|      30|      31|     603|     633|       2
---------------------------------------------------------------------------
  603-  633 (49.88/28.50)	MQAKNLK.NAMTAVQSSAvVTSQ.HDFIPS.L.SS
  635-  667 (31.40/12.90)	MGVPGLQpNLMNTLQSSS..HSQlHSVLGSaLhSS
  668-  683 (25.87/ 9.37)	QQ..........AV.....VGSL.QK.IPM.N.AT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.84|      11|     156|     430|     447|       3
---------------------------------------------------------------------------
  431-  447 (11.83/18.55)	LGSQItskPlrsDMNQM
  764-  774 (22.01/ 6.17)	LGQQI...P...HLYQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     153.89|      37|      37|     777|     813|       4
---------------------------------------------------------------------------
  777-  799 (29.46/10.99)	.....................VS.NMQSKQSLNVDLG.........VLHQHQTP
  800-  837 (58.27/30.58)	GRQSAYNEQSSKSG......dVS.YMSSPHPLQSSFP.........YTSQYSSP
  838-  880 (32.79/13.25)	QTDQLSMISLSKSG.........iSMQPESSPILSLSpsnsltpppILADHE..
  881-  915 (33.38/13.65)	.KQASSISLHSNAGnckqmqtVT.SGPQPPSLVI.................STP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.71|      13|      30|     222|     234|       5
---------------------------------------------------------------------------
  222-  234 (22.77/ 9.16)	QQNVVQQQFQNVQ
  254-  266 (19.94/ 6.95)	QNTLQQAQPSSVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.08|      26|      37|     928|     953|       6
---------------------------------------------------------------------------
  928-  953 (43.40/31.61)	SPVNIQASAASIISSKT....IATEKPIEH
  962-  991 (38.68/27.25)	SHKALSASVSDIDSAVTmvhrMASSKPGNH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.56|      34|     144|     358|     391|       9
---------------------------------------------------------------------------
  351-  382 (34.93/13.10)	.......EQnnfsrIQQKLQVL............GQQNDVSG........................FLQHSTITL
  383-  403 (27.34/ 8.67)	QQAKIVEEQ.......QK................AHQTSSAS........................FL.......
  456-  524 (34.27/12.72)	QLQNIIEHQ......KQLFQCPirpeasyslasnGQTNASDGrevifqklqsmkkmylplliqvykKLQTSQTVL
  740-  761 (27.02/ 8.49)	..............IQQNHQNP............LQQNPLQR........................KLQQST...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.26|      15|      33|    1009|    1023|      10
---------------------------------------------------------------------------
 1009- 1023 (26.94/17.01)	VVNNFSPDNGIITSE
 1043- 1057 (29.33/19.16)	VNDRFKPCNGMEKSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16039 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KENSNALQYHLKQQSQPRQMSHQDVQHQQVQQIIQQNHQNPLQQNPLQRKLQQSTE
2) KQSLNVDLGVLHQHQTPGRQSAYNEQSSKSGDVSYMSSPHPLQSSFPYTSQ
3) KVSSHNNPTISDSSGVQSPSLSPAPSGASHTKNIVVNCEGQSH
4) LQGHQSSQNTLQQAQPSSVQSSSNSDNQQNQQSSAQNLPLIALQQQ
5) RNVGPQQQGQQQTQAQMQHTDNQMKTLMQAKNL
707
783
143
247
576
762
833
185
292
608










Molecular Recognition Features






MoRF SequenceStartStop




NANANA