<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16038

Description Uncharacterized protein
SequenceMDQNQIQNQRAAAAAATTPRAYQLHPARTALIDLFNLYLGRNSRQNSEEVIRENPNKLQKRVTALNRDLPPPNEQFLFDFEQLQSQFPDQEQLRAVTESVLIALVVQCCNHSPRAEFVLFALRSLCNIGYVIWDSFLPSLLSSVSSAEISAGQGANATSSTSLSQVGMMPSSSIVSNSSNFQPASPLSSIHGIGSPVQTATDSPLQSAITLSPVKSSDISFNGQQTVQRANTLLRDNAISCLRQMSCKIILIALESNLKPVTHADIFSHMLNWLVYWDQRKQVIDDSEPSNVWKSDRFLNEWLHSCLDVIWLLVEEVKCRVPFYELLRSGLQFIDNIPDDEALFTLILEIHRRRDMVAMHMQMLDQHLHCPSFGTHRFMSQAYPSATGENARYSPITYPSVLGEPLHGEDLATSIQRGSLDWERALRCLRHALRSNPSPEWWRRVLIVAPCYKHHVQQPPTPGAVFSSEMICEAAIDRTMELLKLTNSETHCWQEWLIFSDVFFFLMKSGGIDFLDFVDKLASRVMKGDHQILRNNHVTWLLAQIIRIELVTNALNTDPKKVETTRKILSFHKEEKTSEPNNVNPQSILLDFISSSQTLRIWSINTSFREHLNHEQLQKGKQIDEWWKQYTKGERVMDYMNLDDRSIGMFWVLSHTMAQPACEAVMNWLASAGVTELLPGSSVQSNERIMAMRECCPLPMSLLSGLSINLCLKLAYQIEESLFLGQVIPSIAMVETYVRLLLIHPHSLFRSHFTALTQRSPSILSKSGVSLLLLEILNYRLIPLYRYHGKSKALMQDVTKLVSMLKGKRGDHRVFRLAENLSLNLIFSLRDFFMIKRELKGPSEFTETLNRVAVISLAITIKTRGVAEVEHLLFLPSLLDQIMATCQHTWSEKTLRYFPPLVRDILMGRIDKIDKRGHAIQAWQQVETTVINQCTQLLSPAADPSYVMTYINHSFPQHRQYLCAGAWTLMHGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHHIHTELQHGHLLQDLLLKASSNLSFFIWNHELLPFDVLLLALTDRDDDPHALRIVLSLIDRPELQQRIKFFNVNRGPPEHWLYAGSFKRIDLQKALGSHLSWKERSPPFFDDIAARLLPIILLIIYRLIENDITDTAEKVIALFNPFLAYYPLRFTFVRDILAYFYGHLPNKLVLRILGILDLPKIPFSESFPLHIRSSNPVVCPPQDYFATLLLSLVNYVIPPLTSKSKSGSTADVSSNALHGAHNKTSATSQSGATNSSEGQKAFYQNQDPGTYTQLVLETAVIELLSLPITPTQIVSSLLQVVVHVQPTLIQSSNGLQGTSSSVGQGSVLPTSPSGGSTDSLGTNRSTPSASGINAANFVSRSGYTCQQLSCLLIQACGLLLAQLPTEFHAQLYLEASRIIKDCWWLTDGKNSQKELDTAVGYTLLDPTCAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTPAIIKHLKPVTSVAMLRITFRIMGPLLPRLAAARPLFGKTLALLLNGISDVFGKNSQPSTPNEASGVADLIDFLYHLILYEGQGGPVQTNSKPKLDTLATCGKLMEILRSDIQHLLCHLWIDPNTSIYAATHPKLVQNPSQQ
Length1614
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.08
Grand average of hydropathy-0.069
Instability index47.38
Isoelectric point6.75
Molecular weight181361.40
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16038
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.80|      22|      42|     134|     174|       1
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  124-  147 (34.15/ 8.77)	SLCNIGY.....ViwDS..FLP.SLLSSVSSA
  162-  193 (20.64/32.10)	SLSQVGMmpsssIvsNSsnFQPaSPLSSIHGI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     494.14|     166|     184|     260|     443|       2
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  200-  373 (182.10/168.93)	.................ATDSPLQSAITLS.PVKSSDISfngqQTVQRaNTLLR..DNAIS.CLRQmsckiiliA..LESN......LkPVTHADIFSHMLNW.....LVYwdqRKQVIDDSEPSNVWKSDRFLNEWLHsCLDViWLLVEEVkcrvpFYELLRSG....LQFIDNIpddeALFTL.....ILeihRRRDMVAMHMQMLDQHLHCPSF
  374-  555 (267.86/187.06)	GTHRFMSQAYPSATGENARYSPITYPSVLGePLHGEDLA....TSIQR.GSLDW..ERALR.CLRH........A..LRSNPSPEWWRrVLIVAPCYKHHVQQpptpgAVF...SSEMICEAAIDRTMELLKLTNSETH.CWQE.WLIFSDV.....FFFLMKSGgidfLDFVDKL....ASRVMkgdhqIL...RNNHVTWLLAQIIRIELVTNAL
  564-  628 (44.18/17.72)	TTRKILSFHKEEKTSEPNNVNP...QSIL......LDFI....SSSQT.LRI.WsiNTSFReHLNH........EqlQKGKQIDEWWK.................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     302.60|     149|     445|     924|    1159|       3
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  751-  866 (69.11/34.40)	......................SHFTaLTQRSPSILSKSGVSLL.LLEILNYRLI............................................................................................................................................................................................................................................................................................................plyryhgkskalmqdvtklvsmlkgkrgdhrvfrlaenlslnlifslrdFF.............MIKREL...............KGPSEFTETLNRVAVISLAITIKTRGV
  867-  973 (98.08/197.94)	AEVEHLLFLPSL..LDQIMATCQH.T.WSEKT.........................................LRYFP..................................................................................................................................................................................................plvrdilmgridkidkrghaiqawQQVETTVINQCTQLLSPAADPSYVMTYINHSfpqhrqYLCAGAWTLMHGH.........................................................................................................................
 1032- 1080 (41.93/41.81)	..........................................................................................................................................................................................................................................................................................................................................................peninsvnlarvlrefspeevtsniytmvdvllhhihtelqhghllqdlllkassnlsFF.............IWNHELLPF.DVLLLALTDRDDDPHALRIVLSLIDRPELQQRIKFFNV
 1083- 1159 (41.83/18.62)	GPPEHWLYAGSFkrIDLQKALGSHLS.WKERSPPFFDDIAARLLpIILLIIYRLIenditdtaekvialfnpfLAYYP.....................................................................................................................................................................................................................................................................................................................................................................................................
 1378- 1497 (51.65/ 0.00)	..............................................................................lrftfvrdilayfyghlpnklvlrilgildlpkipfsesfplhirssnpvvcppqdyfatlllslvnyvippltsksksgstadvssnalhgahnktsatsqsgatnssegqkafyqnqdpgtytqlvletaviellslpitptqivssllqvvvhvqptliqssnglqgtsssvgqgsvlptspsggstdslgtnrstpsasginaanfvsrsgytcQQLSCLLIQACGLLLAQLPTEFHAQLYLEAS......RIIKDCWWLTDGK....................nsqkeldtavgytlldptcaaqdntstaignivallhsFFsnlpqewlegtpaIIKH.LKPVtSVAMLRITFRIMGP........................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16038 with Med23 domain of Kingdom Viridiplantae
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