<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16036

Description Uncharacterized protein
SequenceMDQNQIQNQRAAAAAATTPRAYQLHPARTALIDLFNLYLGRNSRQNSEEVIRENPNKLQKRVTALNRDLPPPNEQFLFDFEQLQSQFPDQEQLRAVTESVLIALVVQCCNHSPRAEFVLFALRSLCNIGYVIWDSFLPSLLSSVSSAEISAGQGANATSSTSLSQVGMMPSSSIVSNSSNFQPASPLSSIHGIGSPVQTATDSPLQSAITLSPVKSSDISFNGQQTVQRANTLLRDNAISCLRQMSCKIILIALESNLKPVTHADIFSHMLNWLVYWDQRKQVIDDSEPSNVWKSDRFLNEWLHSCLDVIWLLVEEVKCRVPFYELLRSGLQFIDNIPDDEALFTLILEIHRRRDMVAMHMQMLDQHLHCPSFGTHRFMSQAYPSATGENARYSPITYPSVLGEPLHGEDLATSIQRGSLDWERALRCLRHALRSNPSPEWWRRVLIVAPCYKHHVQQPPTPGAVFSSEMICEAAIDRTMELLKLTNSETHCWQEWLIFSDVFFFLMKSGGIDFLDFVDKLASRVMKGDHQILRNNHVTWLLAQIIRIELVTNALNTDPKKVETTRKILSFHKEEKTSEPNNVNPQSILLDFISSSQTLRIWSINTSFREHLNHEQLQKGKQIDEWWKQYTKGERVMDYMNLDDRSIGMFWVLSHTMAQPACEAVMNWLASAGVTELLPGSSVQSNERIMAMRECCPLPMSLLSGLSINLCLKLAYQIEESLFLGQVIPSIAMVETYVRLLLIHPHSLFRSHFTALTQRSPSILSKSGVSLLLLEILNYRLIPLYRYHGKSKALMQDVTKLVSMLKGKRGDHRVFRLAENLSLNLIFSLRDFFMIKRELKGPSEFTETLNRVAVISLAITIKTRGVAEVEHLLFLPSLLDQIMATCQHTWSEKTLRYFPPLVRDILMGRIDKIDKRGHAIQAWQQVETTVINQCTQLLSPAADPSYVMTYINHSFPQHRQYLCAGAWTLMHGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHHIHTELQHGHLLQLSLIDRPELQQRIKFFNVNRGPPEHWLYAGSFKRIDLQKALGSHLSWKERSPPFFDDIAARLLPIILLIIYRLIENDITDTAEKVIALFNPFLAYYPLRFTFVRDILAYFYGHLPNKLVLRILGILDLPKIPFSESFPLHIRSSNPVVCPPQDYFATLLLSLVNYVIPPLTSKSKSGSTADVSSNALHGAHNKTSATSQSGATNSSEGQKAFYQNQDPGTYTQLVLETAVIELLSLPITPTQIVSSLLQVVVHVQPTLIQSSNGLQGTSSSVGQGSVLPTSPSGGSTDSLGTNRSTPSASGINAANFVSRSGYTCQQLSCLLIQACGLLLAQLPTEFHAQLYLEASRIIKDCWWLTDGKNSQKELDTAVGYTLLDPTCAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTPAIIKHLKPVTSVAMLRITFRIMGPLLPRLAAARPLFGKTLALLLNGISDVFGKNSQPSTPNEASGVADLIDFLYHLILYEGQGGPVQTNSKPKLDTLATCGKLMEILRSDIQHLLCHLWIDPNTSIYAATHPKLVQNPSQQ
Length1572
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.08
Grand average of hydropathy-0.081
Instability index47.76
Isoelectric point7.00
Molecular weight176531.90
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16036
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     296.19|     102|     182|     200|     380|       1
---------------------------------------------------------------------------
  200-  337 (133.99/143.87)	ATDSPlqsaITLS.....PVKSSDISfngqQTVQRaNTLLRDNAISCLRQmsckiiliALESNLKP......VTHADIFSHmlnwlvywdqrkQVIDDSEPSNVWKSD..............RFLNEWLHsCLDViWLLVEEVkcrvpFYELLRSG....LQFIDNI
  391-  521 (162.20/108.68)	ARYSP....ITYPsvlgePLHGEDLA....TSIQR.GSLDWERALRCLRH........ALRSNPSPewwrrvLIVAPCYKH............HVQQPPTPGAVFSSEmiceaaidrtmellKLTNSETH.CWQE.WLIFSDV.....FFFLMKSGgidfLDFVDKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.06|      45|     310|    1096|    1159|       2
---------------------------------------------------------------------------
 1096- 1159 (67.92/61.56)	NDITDTA.EKVIALFNPFLAYYP......................LRFTFvrdilayfyghlpnklvlRILGILdLPKIP.....FSESFPL
 1401- 1473 (57.14/25.72)	QDNTSTAiGNIVALLHSFFSNLPqewlegtpaiikhlkpvtsvamLRITF..................RIMGPL.LPRLAaarplFGKTLAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.34|      31|     310|     751|     782|       3
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  751-  782 (46.96/30.51)	SHFtALTQRSPSILSKSGVSLL.LLEILNYRLI
 1063- 1094 (50.38/28.62)	SHL.SWKERSPPFFDDIAARLLpIILLIIYRLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.40|      52|     310|     927|     991|       4
---------------------------------------------------------------------------
  927-  991 (72.97/89.60)	ETTVINqctqLLSPAADP....SYVMTYINHSFPQhrqyLCAGAwtlmHGHPENINSVNLARVLREfSP
 1247- 1302 (82.43/57.08)	ETAVIE....LLSLPITPtqivSSLLQVVVHVQPT....LIQSS....NGLQGTSSSVGQGSVLPT.SP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.13|      20|      41|    1506|    1525|       5
---------------------------------------------------------------------------
 1506- 1525 (36.13/18.94)	HLI..LYEGQGGPVQTNSKPKL
 1544- 1565 (30.99/15.26)	HLLchLWIDPNTSIYAATHPKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16036 with Med23 domain of Kingdom Viridiplantae
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