<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16020

Description Uncharacterized protein
SequenceMSNTRDMATIERDLLRIDQALNQVSNVRSTLKQFTQLVEQEQKGPSYVQAFSDRLKNVKQELNRLAIQGNDLKDVLNYAQSIANDGDFDWSAIKSEKQDQQKTDIRKPEKIGSIVKDKADYAYKQLSSMVFDHNTSSTESFFTTYTQQWLSQNKDQASKIDISFEREEQTTLSGTTCHLKVCIHKAFIVELELEYARASNTLIVHQHDIRGLKEEKQLSQGSQYLVFQKLSLLAAVAFEDMTTLFARESFFYILDWLSSYHDLFTAPCIRCHKVLQFDSPVYKYTPPVVRTWNTKHTTDRTAVAYHMRCYHEHKNSQAIALF
Length322
PositionTail
OrganismRhizopus microsporus ATCC 52813
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Rhizopodaceae> Rhizopus.
Aromaticity0.10
Grand average of hydropathy-0.545
Instability index42.59
Isoelectric point6.83
Molecular weight37321.66
Publications
PubMed=27956601

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16020
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.52|      47|     106|     104|     155|       1
---------------------------------------------------------------------------
  104-  155 (72.92/50.57)	DIR..KPEKigSIVKDkADY.AYKQLS...SMVFDHNTS..STESFFttYTQQWLSQNKD
  208-  262 (66.60/33.53)	DIRglKEEK..QLSQG.SQYlVFQKLSllaAVAFEDMTTlfARESFF..YILDWLSSYHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.27|      21|      40|      13|      33|       2
---------------------------------------------------------------------------
   13-   33 (33.55/26.69)	DLLR.IDQALNQVSNVRSTLKQ
   53-   74 (29.72/22.82)	DRLKnVKQELNRLAIQGNDLKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16020 with Med27 domain of Kingdom Fungi
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