<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16017

Description Mediator of RNA polymerase II transcription subunit 33B
SequenceMEVPMQCSLWESVLELTKVSQEKGGDPLVWAIQVSSCLSSSGVSLPSLELANFLVSHICWENNLPIAWKFLEKALVLKIVSPIIVFPLLSSRVIQNRHLRPAAYRLYMELLRRHIFTLKIHVNMQSYKKILNFLDSVLHLTEVFGMHADEPGVLVVEIIFSIVWQLLDASLDDEGLLQLTPEKKSRWPTKTEDMEIDGCIADMERNEHKVRLKNLNTLLAIELIGQFLQNKATARILYLARQNMPVHWGAFVQRIQLLAGNSSALQSSSIISPKALLQLASDAHNLIKANSLQEYVRSTSRSLATCAGFCFGSSRSSLWLPLDLFLEDAMDGSQVNATSAIEIITDLVKSLQAINATTWHETFLGLWMAALRLVQRERDPIEVPVPRLDTRLCMLFSLITLVIADLIEEEESEACDEIESSIDRRMKKQVEGTRRGDVVSCLQYLGDYQSLLTPPQAVTTAANQAAAKAMMFRSGINTSTSYFECINMKDTPTNCSGNLHHLIVEACIARHLLDTSAYFWPGYVNGHMNQLPASMPTQVPGWSSFMKGAPLTPAMINTLVSAPASSLAELEKIFEMAVKGANDEKIAAATILCGASLILGWNIQEHTVNFITRLLSPPVPTDYSGKESHLIGYAPMLNVLLVGIAPVDCVQIFSLHGMVPQLAASSMTICEVFGSCAPNISWTLTTGEDISVHAVFSNAFALLLKLWRFNHPPIEYRVGDVPPVGCQLTPEYLLLVRNSHLVSSGNMLKDPNRRRLATVASSSSPNPIFVDSFPKLRVWYRQHLACIASTLSGLVNGTLVCQTVDVLLNMMFKKINSGSQSLISVTSGSSSSSGTGSEDTSPRPKLPAWDILEAIPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLAAGGSSPAILPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLSNNHAVIQLLKSCFNATLGLNSSSISSNGGIGALLGHGFGSHFYGGISPVAPGILYLRVYRSIRDIMFLREEIVLLLMQSISEIAHSELPRQRLNKLKIPKNGKKFGNVSLAATMTRVKLAALLGASLLWLSGGSGLVQSLIKETLPSWFLSVHNTNQEGDIGLLVPMLKGYALAYFAVLCGAFASGVDSLSMASKRRPKIIGRHVEFIASVLDGKISLGCDPATWHAYVSGFVSLMVGCTPTWVFEVDAELLKRLSKGLRRWHEEDLALALLSIGGIGTMGSAAELIMEASS
Length1319
PositionTail
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.221
Instability index48.64
Isoelectric point7.00
Molecular weight143910.53
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16017
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.18|      47|     132|     492|     541|       1
---------------------------------------------------------------------------
  492-  541 (86.71/60.13)	PTNCSGNLHHLIVEACIARHLL......DTSAYFWpgyVNGHMNQLPASMPT..QVPG
  620-  674 (74.47/43.44)	PTDYSGKESHLIGYAPMLNVLLvgiapvDCVQIFS...LHGMVPQLAASSMTicEVFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.82|      39|     132|     281|     321|       3
---------------------------------------------------------------------------
  281-  320 (61.03/48.09)	SDAhNLIKANSLQEYVRSTSRSLATCAGFCFGSSRSSLWL
  330-  368 (65.79/40.79)	MDG.SQVNATSAIEIITDLVKSLQAINATTWHETFLGLWM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.47|      23|     132|      72|     108|       5
---------------------------------------------------------------------------
   82-  106 (38.51/47.46)	PIIV..FPLLssRVIQNRHLRPAAYRL
  767-  791 (40.96/15.23)	PIFVdsFPKL..RVWYRQHLACIASTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.88|      16|     933|      33|      48|       6
---------------------------------------------------------------------------
   33-   48 (27.98/14.33)	QVSSCLSSSGVSLPSL
  930-  945 (26.90/13.52)	QIKKILAATGVDVPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.38|      16|     130|      11|      30|       9
---------------------------------------------------------------------------
   12-   30 (21.83/25.09)	SVLElTKVSQekGGDPLVW
 1237- 1252 (32.54/16.98)	SVLD.GKISL..GCDPATW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16017 with Med33 domain of Kingdom Viridiplantae
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