<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15996

Description Uncharacterized protein
SequenceMLLRDEEEVELSEMEWNDMVNPLISSPASTSWKIQQVWEPDMLYVDYTLLPPSPMEDFALWNHSWSPPPPPHRQESGMIKGVAKAFDAQLQEDAAGGALLTNDWRFELLPDSRQRIANKIILTLKRHLPVSGDEGLLELRKIAIRFEEKVYTAATSQIDYLRKISLKMLTMETKSQHPVCTETVPVVDESLHVQLDAKSPPEDPTLHYLQSGEECALPDPQRSVTEHRNLKRKGDAGPSGQNHTICDLGSKQKMDKKMKKTWGIGGSISLNDLKQHFGKKREEAAESLDVSVSTLKRICRENGISRWPSKNIKRERLLLSNLSTNETVSEAGGGRISISTTPTAFASTEVLAKSNQQNNLSLDNEIGTSVNHGVLRNDEGNGETRMIQEGYSADQEVLYKPQEFEPGPDSFNPAYSSSDAPTILYPLPQERMPAEDSPDQQGEEIARQIEITDGTSHLEKQCLGRERLGCNTEKEVIVRVEDSSSYDFGSVLELIQDHHADFASFHLVDKDPLISTDDLESNCIKSQSTLVSESEPSLINDARRMKLVFEKLITLPLEDLTNTNQEASMTEALTILSGNLSLFTDEQAKQLLEFKFDFPTIMYSWRDCSQTRIDCRNFLAEFERTNSLLETSTKEEVDLKDRYTQIECKEKEMLAQLEAIQKEKNELTKRRSENFIQNKHLAALAEEQAGRTKEKELQMSIASAKLDKLKSQWASVQSSFN
Length721
PositionTail
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.646
Instability index52.63
Isoelectric point5.00
Molecular weight81437.55
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15996
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.92|      19|      21|     401|     419|       1
---------------------------------------------------------------------------
  401-  419 (37.23/23.32)	PQEFEPGPDSFNPAYSSSD
  421-  439 (35.69/22.06)	PTILYPLPQERMPAEDSPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.65|      15|      21|     139|     157|       2
---------------------------------------------------------------------------
  139-  157 (20.26/25.23)	LRKIAIrfeeKVYTAAT.SQ
  161-  176 (22.40/14.59)	LRKISL....KMLTMETkSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.21|      17|      22|     231|     252|       3
---------------------------------------------------------------------------
  231-  252 (22.48/22.80)	KRKGDAGPSgqnHTICDLgsKQ
  259-  275 (30.72/15.24)	KKTWGIGGS...ISLNDL..KQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15996 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFASTEVLAKSNQQNNLSLDNEIGTSVNHGVLRNDEGNGETRMIQEGYSADQEVLYKPQEFEPGPDSFNPAYSSSDAPTILYPLPQERMPAEDSPDQQGEEIARQIEI
2) ALPDPQRSVTEHRNLKRKGDAGPSGQNHTICDLGSKQ
344
216
451
252










Molecular Recognition Features






MoRF SequenceStartStop




NANANA