<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15993

Description Uncharacterized protein
SequenceMLKKIDFFLFKCKWFDLRKKTGMQEDKNFMSICVKRFWYEHDPFLLATQEKQVFYIDDPKLEKNWRIVLKFQSRHIYDVPEKENSDVENNELPVTNAEVYQDTSLESKSIVNDTVDIWSHLHRDDVDSITIDANINELEAQTEYEVKVDYNGEDYDQEDDTMVEYISDHEENKGTFEALGNSAICATSIFFYHLSKVIAAYLLAILGGNTSPADKNLKKILATGNAYNCLAKILNPCGHRYEKGVLIVAGKSKSESKAKEKKHKKHKDKDKEHKKLKHHHKDRSKEKDKEKKKDRTGHHDSSAGLSSGWRTWRNMARPFGYFAASARDAVGSAQLTVGTTNNLMNNTDLEYRNGKLIISSNSLSGGLTSRMEELVNRTLLKERKAKVYNII
Length391
PositionHead
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.09
Grand average of hydropathy-0.766
Instability index27.24
Isoelectric point8.32
Molecular weight44998.32
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
ribosome	GO:0005840	IEA:UniProtKB-KW

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15993
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.84|      23|      25|     251|     273|       1
---------------------------------------------------------------------------
  251-  273 (38.33/23.18)	KSKSESKAKEKKHKKHKDKDKEH
  277-  299 (41.50/25.72)	KHHHKDRSKEKDKEKKKDRTGHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.52|      19|      25|     179|     202|       2
---------------------------------------------------------------------------
  179-  201 (27.63/38.10)	LGNSAICATSiffyHLSKVIA...AY
  206-  227 (27.89/16.90)	LGGNTSPADK....NLKKILAtgnAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.21|      15|      20|      46|      62|       3
---------------------------------------------------------------------------
   46-   62 (20.59/14.14)	LATQEKQVFyiDDPKLE
   69-   83 (25.62/11.63)	LKFQSRHIY..DVPEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.35|      11|      25|     330|     340|       4
---------------------------------------------------------------------------
  330-  340 (18.17/15.66)	VGSAQLTVGTT
  358-  368 (18.18/15.68)	ISSNSLSGGLT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15993 with Med19 domain of Kingdom Viridiplantae
Unable to open file!