<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15990

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMLDKLIVAVEGTAALGPYWKTILSDYLDKIIRSFFGAELTSQKSSAADVEVSLVVFNTHGSYSACLVQRSGWTRDMDTFFQWLSAIPFSGGGFNDAAVAEGLAEALMMFSSLNGNQSRQNMEGKRHCILISASNPYPLPTPVYRPQMQKLEQNENIEAQTDSRLSDAETVAKAFPQCSISLSVICPKKLPKLRAIYDAGKHNPRAADQPIDTAKNPNFLVLISENFIEARAAFSRSGMTNLTSNQSAVKMDVSSVPPVSGPQSISISAANVPAMSRSPISAGNIPPATVKIEPNTATSMAGPAFSHIPSVRPALQPVPSLQTSSPLSVSQEMASHTENVQEMKPIVMTQSLRPVAAAAVNVRILNDVAQARQALAGGTSIGLQSMGGTPMLSSMISSGMASSVPAQTVLSSGQSGVTTITGSVPLAGSGQNTQNSAPSSFTSTAPSMSGNSNISISQPLSNIQGGVSMAGQTVPGMSQGNLPGTQMMPSGTVMNQNVLTGMGATGLPSGTSTMMPAPGMSQQGQPGMQPVGVNSTAANMPLSQQQTSATLPSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSSSASESLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLSQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQPPPQQQLQAQHPQLQQQQQHLSQLQQQPLQQMQQQQQQPLMQLQHQQQIPLQQSQVPQMQQQHIHQLQQQQQQIPQMQQPQQQQPMVGTGMNQAYLQGPARSQLMTQGQVSSQGLPTMSGGSFIN
Length811
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.04
Grand average of hydropathy-0.293
Instability index64.81
Isoelectric point9.10
Molecular weight86847.78
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15990
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.14|      16|      16|     738|     753|       2
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  738-  753 (30.33/ 9.27)	QQSQVPQMQQQHIHQ.L
  756-  772 (27.81/ 7.88)	QQQQIPQMQQPQQQQpM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.84|      17|      18|     397|     414|       3
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  379-  395 (23.17/ 6.34)	SIGL.QSMGGTPMLSSMI
  396-  413 (24.67/10.65)	SSGMaSSVPAQTVLSSGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.26|      13|      16|     476|     491|       4
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  476-  490 (24.07/11.20)	MSQGNLPGtqMMPSG
  519-  531 (26.19/10.81)	MSQQGQPG..MQPVG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     219.03|      66|      70|     203|     271|       5
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  199-  267 (104.98/58.52)	GKHNPRAADQPIDTAKNPNFLVLISENFIEARA..AFS.....RSGMTNLTSNQSAVkmdVSSVPPVSGPQSISIS
  268-  335 (82.55/39.50)	AANVPAMSRSPISAGNIPPATVKIEPNTATSMAgpAFShipsvRPALQPVPSLQT......SS..PLSVSQEMASH
  425-  456 (31.49/10.30)	....................................LA.....GSGQNTQNSAPSSF...TSTAPSMSGNSNISIS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      19|     148|     623|     652|      12
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  633-  653 (22.72/25.68)	LSqLQEKKlCAVIQL..PSQTLL
  654-  674 (28.90/10.24)	LS.VSDKA.CRLIGMlfPGDMVV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15990 with Med25 domain of Kingdom Viridiplantae
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