<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15988

Description U-box domain-containing protein 35
SequenceMPYSGRGVQPMGRIRGDRGAKSSSEAQNRTYALADRQNLEASPDVVLSTLSIFSFYAYALINPGSTLSYVTPLVAGKTFITEEERQSMEENNISKMEGHGTMQSPISSVVAIAITGNKNSRYVVKWALEKFIPEGETRFMLLHVRPEITAVPTPMGNLIPIAQVREDVADAFRKEVELQASEKLLPYKTMCSRRQVQVGVVQIESNDVINAIAGVVSKCSINKLVIGTSTPGLFSRGRNLSASISDTAPTFSTVYAVSKGKLSSVRPSTTENNRFLVDDSSDTSSSSNNSTGHSFSSQTERTDRDNNSNAPAFYSHLYSPTHQPQRYQAKSPVQRALQTLLHKRTKFRGNIQSISSSVDIGEAFQTLSIKSNSPSHKRANLDEVIHPRALSVAIGEAEDENSCYFSSLGITDLYNRASSFKKAKVDNQTWSTSPSCTSGAPTNSSTGSQVNINYDLEKLRIELRHIQGMYAIAQTEAIDASQKLNEFQKLRVEEANKLKQIILKAEEAKEVAEQEKLKCETAKKEADYAMECVEREAEQRRAAESIANREARTKEKLEKSLVLPLRHYQEFTWEEIVTASSSFSEDLKIGMGSYGMVYKCYLHHTTAAVKVLHCAEAHRTKQFQQELEVLSKIHHPHLLFLLGVCPERGCLVYEYMENGSLEDRLTRKNNTPPLPWFDRVRIAWEVASALAFLHNTKPKPIIHRDLKPADILLDHNLVSKIGDVGLSTMVQSDSSSAMTKFKDTSPVGTLCYIDPEYQRTGLVSTKSDVYAFGMVILQLLSAKRAIALAHMVEMAIEEDNLVELLDKEAGEWPLQETKELAVLALKCTELRRRDRPDLKYEVLPVLERLKEVADRARHLKYSQLPPPSHFKCPQLKEVIKDPYVAADGYTYDRKAIESWLMVNDNSPVTNLPLPHKHLLPNYALLSAIKEWKSGNH
Length936
PositionTail
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.426
Instability index46.39
Isoelectric point7.85
Molecular weight104675.67
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15988
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.00|      22|      31|     342|     363|       1
---------------------------------------------------------------------------
  342-  363 (38.71/31.98)	HKRTKFRGNIQSISSSVDIGEA
  376-  397 (38.29/31.53)	HKRANLDEVIHPRALSVAIGEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.51|      26|      30|     472|     497|       2
---------------------------------------------------------------------------
  440-  466 (26.22/15.28)	.APTNSSTGSQvNINyDLEKLRIELRHI
  472-  497 (41.19/28.23)	IAQTEAIDASQ.KLN.EFQKLRVEEANK
  503-  524 (32.09/20.35)	LKAEEA....K.EVA.EQEKLKCETAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.49|      18|      19|     826|     844|       3
---------------------------------------------------------------------------
  826-  844 (28.68/24.44)	KCTELRRRDRpDLKYEVLP
  848-  865 (31.81/20.96)	RLKEVADRAR.HLKYSQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.54|      11|      15|     288|     298|       4
---------------------------------------------------------------------------
  288-  298 (20.85/14.43)	NNSTGHSFSSQ
  306-  316 (21.69/15.35)	NNSNAPAFYSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      15|     762|     775|       6
---------------------------------------------------------------------------
  762-  775 (23.77/15.42)	LVSTKSDVYAFGMV
  779-  792 (22.23/13.99)	LLSAKRAIALAHMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.21|      34|     211|     677|     713|       7
---------------------------------------------------------------------------
  677-  713 (54.14/44.15)	FDRVRI.AWEVASALAFLHNTkpkPIIHRDLKPADILL
  891-  925 (58.08/38.55)	YDRKAIeSWLMVNDNSPVTNL...PLPHKHLLPNYALL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15988 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SGRGVQPMGRIRGDRGAKSSSEAQNRTYALA
2) STTENNRFLVDDSSDTSSSSNNSTGHSFSSQTERTDRDNNSNAPAFYSHLYSPT
4
268
34
321










Molecular Recognition Features






MoRF SequenceStartStop




NANANA