<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15987

Description U-box domain-containing protein 34
SequenceMSQKSFSGEKDKATVVAIDKDKGSQYALKWAIDNLIGRGKNVTLLHVKIRPSNSLPNADVSDGTPRVYKSDPDTQAKELFLPFRCFCNRKNIQVNEVVLEGIDIANSISDYVTANVIENLVIGATSRNGFVSRFKTIDVPSSVFKVIPGFCTVYVIAKGKVQSIKNATSPVPSSPPVTLQNQTTASLGAKLGFVDTRYGQSNDTRGSMTEIRSPYATRSSNDDTDFIKSPFNRGKGINRSYGDLSVGESDLSFVSSGRPSSDRTFPISMDSHDLGLPPRLSNSSDTDIKYSAPRLSNSSETDSRLSFGSSYSATRLSEVNAFSSNSFESGNGSWSSTNNLEEIEAEMRRLKQELKQTMDMYSSACKEALSAKHKALELHRWKVEEEQKLEDARLAEEAALAIAEKEKAKCRAALEAAEEAQRIAEREAQRRITAERKALIEAEEKKKVLDALAQSDCRYRKYTIEEIEAASDNFAASRKIGEGGYGPVYKCYLDHTQVAIKVLRPDAAQGRSQFQQEIEVLSCIRHPNMVLLLGACPEFGCLVYEYMANGSLDDRLFRRGNTPVLPWQLRFRIAAEVGTSLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSFGIMLLQIITARPPMGLTHHVERAIEKGTIADMLDPAVPDWPVEEALTFAKLALKCAELRRKDRPDLGTVILPELNRLRILAEEAMQPMHFGRSPTSESRSIPQVISGFDSNKSRSSNPFSSSTKSRGE
Length791
PositionTail
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.435
Instability index47.35
Isoelectric point8.09
Molecular weight87559.04
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15987
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.06|      12|      19|     395|     406|       1
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  395-  406 (19.14/10.98)	AEEAALAIAEKE
  416-  427 (19.08/10.92)	AAEEAQRIAERE
  434-  445 (17.84/ 9.79)	AERKALIEAEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.12|      36|      41|     238|     274|       2
---------------------------------------------------------------------------
  186-  226 (30.57/12.78)	.......SLG...........AKLGFVDT...RYGQSNDTRG.SMteirspyatrssnDDTDF
  238-  274 (61.52/36.09)	NRSYGDLSVG..........ESDLSFVSS...GRPSSDRTFPiSM.............DSHDL
  282-  328 (37.04/16.85)	NSSDTDIKYSaprlsnssetDSRLSFGSSysaTRLSEVNAF..SS.............NSFE.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.30|      27|      42|      86|     114|       3
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   86-  114 (41.79/37.98)	FCNR.KNIQVNEVVLEGidIANSISDYVTA
  130-  157 (43.52/31.90)	FVSRfKTIDVPSSVFKV..IPGFCTVYVIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.70|      20|     167|     557|     576|       9
---------------------------------------------------------------------------
  557-  576 (39.07/24.64)	FRRGNTP.....VLPWQLRFRIAAE
  721-  745 (29.62/17.01)	LRRKDRPdlgtvILPELNRLRILAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15987 with Med32 domain of Kingdom Viridiplantae
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