<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15986

Description Pre-mRNA-processing protein 40C
SequenceMQSSRSQTSVMSSATGEPTTSSSTPNADSTQEVAQGKYIPPPGYSVGQASFSYMNASVPPGSSQQSSSSPVIPSTSGGSSAPLQPPLPGQSANVGSSFSYNISQTDNNFSSGLQFSASTLRPAAPDHSVDVKNVSPAASLQPPPPLVSTGLNSFIPGTAAAAGPLLSGSNLSFNGNPQMAQIDQPMKPLQNRGVDVAQETGGMTSATFVMQSITQAGHMNSGSPATAFPTSHMGSPNMRMPHAPQFLPAGVPRNPVTPGPPGLGPAIPPSSNLTATASPGVPSLPVRPNVPPVHPLANPPVQQQTYSPYLSPTPMAPAHQGPWLQPPPGTTMLRPPFPSYPVGFAVPFPLSATSAPLSSVTWPETRPPGVAPVAAPPGVPTTASQSTHALGLQPELPPGVDSGKHVNDADSKEGASTSEQLETWTAHRTETGAIYYYNSLTGESTYEKPAGFRGEPGKVAAQPTPVSWEKLAGTDWALVATNDGQKFYYNTKTKLSSWQIPGEVTELKKKHEADALQAQPPSTPNVNESTEKGSAPISLSIPAVNTGGRDATTLRPSIVPGSSALDLVKKKLMDSGAPPAVSSPAPASSGVISSELNGSKALESTIGAAQKENIKEKSKEANDNGSLSGSSSDSEDDEGVPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKTLFEHYVKTRADEERKEKRAAQKAAVEGFKQLLEEAKEDINEDTDYQSFKKKWGYDPRFETLDRKEREVLLNERVLQLRKAAQEKAHAVRAAAISQFKSMLREQGDITLNTRWSKVKDSLRNDPRYKSIKHEEREALFNEYLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREEQEVERVRLKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSELEKLFREHVKILYERCAQEFKALLAEVITVEACSRETDGKTVANSWSTAKQLLKGDPRYSKMARKDRESLWRRYVEDIQRRQKSSFDEGDKARSKGSSDSRRR
Length1030
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.711
Instability index53.33
Isoelectric point8.74
Molecular weight111727.68
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15986
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     131.11|      28|      28|     241|     268|       1
---------------------------------------------------------------------------
  229-  267 (46.16/17.32)	PtshmgspnmrmPHAPQFLPAG..VPRNPVTPGP...PGLGP.AI
  268-  298 (27.45/ 7.26)	P....pssnltaTASP.....G..VPSLPVRPNV...PPVHPlAN
  299-  332 (32.28/ 9.86)	P......pvqqqTYSP.YLSP...TPMAPAHQGPwlqPPPGT.TM
  335-  358 (25.22/ 6.06)	P...........PF.PSY.PVGfaVPF.PLSATS...APLS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     388.10|      95|     101|     728|     828|       2
---------------------------------------------------------------------------
  647-  693 (45.60/24.55)	..............................................................IIQFKEMLKERG.VAPFSKWEKELPKIVFDPRFKAIpS.YSARKTLFEH
  728-  828 (148.84/124.13)	INEDTDYQSFKKKwgYDPRfetlDR.KEREVLLNERVLQL.RKAAQE......KAHAVRAAAISQFKSMLREQGDITLNTRWSKVKDSLRNDPRYKSI.K.HEEREALFNE
  835-  922 (99.23/67.73)	AAEQEVARIAKAK..HDEE....DKlKER.....ERALRK.RKEREEqevervRLKARRKEAVESYQALLVEIIKDP.QASWTESKPKLEKDPQGRAA.NpH.........
  924-  998 (94.42/62.18)	.......................DQ.SELEKLFREHVKILyERCAQE.......FKALLAEVIT.VEACSRETDGKTVANSWSTAKQLLKGDPRYSKM.A.RKDRESLW..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.27|      26|      28|     406|     432|       3
---------------------------------------------------------------------------
  406-  432 (38.23/27.42)	VNDADSKEGASTSEQLETWTAhRTETG
  434-  457 (45.94/28.29)	IYYYNSLTGESTYEKPAGF...RGEPG
  486-  502 (32.09/17.37)	KFYYNTKT......KLSSWQI....PG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     162.08|      26|      28|      59|      84|       4
---------------------------------------------------------------------------
   34-   66 (28.50/ 8.91)	AQ.GKYIPP.........P..GYSV.......G.QasfsymnasvPPGSSQQS
   67-   95 (35.52/12.95)	SS.SPVIPS.........TSGGSSA.......PLQ.......pplPGQSANVG
   96-  128 (23.61/ 6.09)	SSfSYNISQ.........TDNNFSS.......GLQ....fsastlRPAAPDHS
  130-  149 (25.09/ 6.94)	DV.KNVSPA.........AS.............LQ..........PPPPLVST
  372-  401 (23.46/ 6.00)	....PVAAP.........PGVPTTAsqsthalGLQ..........PELPPGVD
  529-  563 (25.91/ 7.41)	ST.EKGSAPislsipavnTGGRDAT.......TLR..........PSIVPGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.98|      21|     209|       6|      26|       5
---------------------------------------------------------------------------
    6-   26 (39.36/21.33)	SQTSVMSSAT.......GEPTTS..SS...TPN
  205-  237 (22.62/ 8.98)	SATFVMQSITqaghmnsGSPATAfpTShmgSPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.86|      16|      18|     150|     165|      10
---------------------------------------------------------------------------
  150-  165 (29.14/18.91)	GLN.SF..IPGTAAAAGPL
  168-  186 (22.72/12.89)	GSNlSFngNPQMAQIDQPM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15986 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APLSSVTWPETRPPGVAPVAAPPGVPTTASQSTHALGLQPELPPGVDSGKHVNDADSKEGASTSEQLETWT
2) ASFSYMNASVPPGSSQQSSSSPVIPSTSGGSSAPLQPPLPGQSANVGSSFSYN
3) IPGEVTELKKKHEADALQAQPPSTPNVNESTEKGSAPISLSIPAVNTGGRDATTLRPSIVP
4) LLSGSNLSFNGNPQMAQIDQPMKPLQNRGVDVAQETGGMTSATFVMQSITQAGHMNSGSPATAFPTSHMGSPNMRMPHAPQFLPAGVPRNPVTPGPPGLGPAIPPSSNLTATASPGVPSLPVRPNVPPVHPLANPPVQQQTYSPYLSPTPMAPAHQGPWLQPPPGTTMLRPPFP
5) MQSSRSQTSVMSSATGEPTTSSSTPNADSTQEVAQGKYIPP
6) SGLQFSASTLRPAAPDHSVDVKNVSPAASLQPPPPLVSTGLNSF
7) SKALESTIGAAQKENIKEKSKEANDNGSLSGSSSDSEDDEGVPTKED
355
49
500
165
1
111
599
425
101
560
338
41
154
645










Molecular Recognition Features






MoRF SequenceStartStop




1) LWRRYV
2) VAQGKYIPPPGYSVG
997
33
1002
47