<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15979

Description Heat shock cognate 70 kDa protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPADKPMIVVNYKGEDKQFSAEEISSMVLIKMKEIAEAFLGTTIKNAVVTVPAYFNDSQRQATKDAGTISGLNVMRIINEPTAAAIAYGLDKKSSSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSGIHDIVLVGGSTRIPKVQQLLQDFFNGRELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELTGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDEKIGSKLSPEDKKKIEDSVEQAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGGADGPDMAGGMDDDGPSAGASAAGPKIEEVD
Length650
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.455
Instability index33.89
Isoelectric point5.07
Molecular weight71367.97
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15979
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.18|      50|      74|     412|     466|       1
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  412-  466 (74.65/63.07)	AGGVMTTLIPRNTTipTKKEQVFSTysdNQPGVLIQ......VYEGERARTRDNNLLGKFE
  488-  543 (74.53/47.80)	ANGILNVSAEDKTT..GQKNKITIT...NDKGRLSKeeiekmVQEAEKYKAEDEEHKKKVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.57|      40|      74|     220|     261|       2
---------------------------------------------------------------------------
  220-  261 (66.35/48.52)	EGI.FEVKAT.AGDTHLGGEDFdnRMVNHFVQEFKRKNKKDISG
  295-  336 (64.22/40.49)	EGIdFYTTITrARFEELNMDLF..RKCMEPVEKCLRDAKMDKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.64|      45|     189|     170|     218|       3
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  170-  218 (62.30/53.99)	GLNVMRIINePTaAAIAYGLDKKSS.STGEKNVLIFDLggGTFDVSLLTI
  362-  407 (71.34/45.14)	GRELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      38|      55|       4
---------------------------------------------------------------------------
   16-   33 (19.08/ 8.70)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.67/19.27)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.52/12.93)	NQvaMNPTNTVF.DAKR..LIG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15979 with Med37 domain of Kingdom Viridiplantae
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