<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15975

Description Uncharacterized protein
SequenceMPIGVITVAVTATAAVLAVQVHLLVIAIRRLQELEMANLTLQVSLQGFKRSRTGISESFSQGGAVVNPSTSDYASREVNSSAITGGNDQTGLQWGWDDDDRDVGMDIQALLPEFGDFGDFFENDALPFGEVVILSLDGNELISPFIFEASRNCMSLRLLCFLPQIVWMLVAARPSMMDVQDQLLLPVGFSSFESFNQPPPPSILDDSLSKHQEVIKSAAVDNQVNSTSASIAGEFDHLIKAEALMSFAPKYGAVETPTGELPFDFQESLCYEVPGSGDCTTRHDTGSILQSKKHYTHIESGKEKNNDKLSGYVRSCATRETQVALSPFSAFNSTNSVKGMSRFSGSSSRNHSQGEAVVSGDNLSSKSEMKKKEIIPVRIAGDIDGGLLDGTLNAPVGV
Length398
PositionKinase
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.112
Instability index51.60
Isoelectric point4.73
Molecular weight42865.71
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15975
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.96|      18|      71|     101|     120|       1
---------------------------------------------------------------------------
  101-  120 (27.29/24.69)	RDVGMDI..QALLPeFGdFGDF
  173-  192 (30.67/17.63)	RPSMMDVqdQLLLP.VG.FSSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.31|      29|     134|      57|      90|       2
---------------------------------------------------------------------------
   60-   88 (50.86/42.38)	SQGGAVVN....PSTSDYASREVNSSAITGGND
  352-  384 (43.45/20.35)	SQGEAVVSgdnlSSKSEMKKKEIIPVRIAGDID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15975 with Med13 domain of Kingdom Viridiplantae
Unable to open file!