<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15973

Description Uncharacterized protein
SequenceMSTLSSSPKQQPPWQVIVLVSTHLDPKTLAIASCVCKSWSISLSLDQLWQPLCCSHYPSLSTLHNNNDNNNSYDSVVSYRRLYALGQRASNRRLKQPSKPCVSISNIIFALNIYKNSVCVVSLVKNASQLSFDKKGVFRFDIDVEQWLRNSGSAADNKNGDLGTFDALGAVKVTWDVILEGYKGVFNVMNCKGKGRFVLGLEGWFSEELPPPGCCSSDTVSGLVADLRLGLKVEDGRAIVEKISAGILSIGLSSSRTLLADDATPISSPLTPLLTSSTGSTEAEKAISKPSKVQAVLKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAVHNHGFDPDRLLVGGHGFKPWKQPLAEMQAEAFLGKGLFKKRLSYHAKGKCGMMVRPECRLTVVLREITPEEEAEIAKLRVSNFKKLSKRERRLVPHKLIETTPIWNRKGKPRSSGAVMRRSRKPDGQISVPENQVYVNDKFFKKKIVRIDSFDTVDRKKKSMEEIEDLIECSLLHVILVPTQDVYMGPTEEEKANVAETGIRSAHSMLIEMANLTFQVALQGLKRSRTGISESFSQGGAVALLPEFGDFGDFFENDALPFGEVVILSMDGNELISPFIFEASRNCTSLRLFMFPASDSVDVGSSPCPAMMDVQDQLLLPVVFSSFESFNQPLPPAILDDSLTKHQEVIRSAAVANQVNSTSASIAGEFDHLIKAKALMSFAPEYGAVETPTGENSHLIFRNPYVPKSREVETANSSSNSYVYSATPPLSPCFDACEEKSGLTVNLKAGTARHDTGSIIQSKKYYTHIESGKEKNDDKLSDYVRSCATRETQVAQSPFSGFNSANSVKVFMCKIRHTVLSSSGCLPVGMNRMSGSINRNQSQGEAVVSGDNLSIKSELKKKEIIPVRIEGDIDGGLLDGTLNAPVGVWRSVGVSKGMKQPTAGLESCHSVQHNSFIEDSC
Length968
PositionKinase
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.222
Instability index50.30
Isoelectric point8.75
Molecular weight105896.92
Publications
PubMed=29089032

Function

Annotated function The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. This protein binds specifically to 23S rRNA. 
GO - Cellular Component
large ribosomal subunit	GO:0015934	IEA:InterPro

GO - Biological Function
structural constituent of ribosome	GO:0003735	IEA:InterPro

GO - Biological Process
translation	GO:0006412	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15973
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.99|      37|     160|      14|      55|       1
---------------------------------------------------------------------------
   14-   55 (60.20/48.13)	WQVIVLVSTHLdpktLAIASCVCKSWSIsLSL.....DQLWQPLCCS
  175-  216 (65.78/38.48)	WDVILEGYKGV....FNVMNCKGKGRFV.LGLegwfsEELPPPGCCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.59|      21|      24|     715|     738|       2
---------------------------------------------------------------------------
  715-  738 (32.67/31.86)	GEFDHLIKAKalmSFAPEYGAVET
  741-  761 (38.92/27.95)	GENSHLIFRN...PYVPKSREVET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.66|      19|     160|     510|     533|       3
---------------------------------------------------------------------------
  510-  528 (30.49/24.44)	SMEEIEDLIECSL..LHVILV
  538-  558 (25.17/ 8.43)	TEEEKANVAETGIrsAHSMLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.55|      10|      24|     654|     665|       4
---------------------------------------------------------------------------
  654-  665 (17.78/18.26)	PC.PAMMDvqDQL
  680-  690 (14.77/ 7.12)	PLpPAILD..DSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.74|      39|      48|     356|     394|       5
---------------------------------------------------------------------------
  356-  394 (69.67/46.71)	PD.RLLVGGHGFKPWKQP.LAEMQAEAFLGKGLFKKRLSYH
  405-  445 (54.08/34.63)	PEcRLTVVLREITPEEEAeIAKLRVSNFKKLSKRERRLVPH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15973 with Med13 domain of Kingdom Viridiplantae
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