<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15968

Description Heat shock cognate 70 kDa protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVKEDMKLWPFKVVAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMKEIAEAFLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAIDQAISWLDSNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGEAGVPMDDDAPPAGGSSAGPKIEEVD
Length648
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.395
Instability index34.22
Isoelectric point5.11
Molecular weight70931.59
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15968
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     463.98|     158|     189|     170|     339|       1
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  170-  339 (234.19/195.60)	GLNVLRIINePTaAAIAYGLDKKATSV.GEKNVLIFDLggGTFDVSLLT..IEE..GIFEV...KATAGDTHlGGEDFDNRMVNH...FVQEFKRKHKKDISGNprALRRLR.TACERAKRtlsSTAQTTIEIDSLYEGVDFYSTITRARFEE....LNMDLFRKCMEPVEKCLRDAkmDKSSVHD
  362-  535 (229.78/153.76)	GKELCKSIN.PD.EAVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPLSlgLETagGVMTVlipRNTTIPTK.KEQVFSTYSDNQpgvLIQVFEGERARTRDNN..LLGKFElSGIPPAPR...GVPQITVCFDIDANGILNVSAEDKTTGQKnkitITNDKGRLSKEEIEKMVQDA..EKYKAED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.82|      16|      21|      13|      32|       2
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   13-   28 (33.53/27.95)	DLG..TTYSCVGVWQHDR
   35-   52 (26.29/11.16)	DQGnrTTPSYVGFTDSER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.67|      18|      21|     112|     129|       4
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  112-  129 (27.87/20.48)	KGEEKQFAAEEISSMVLT
  132-  149 (26.79/19.39)	KEIAEAFLGSTVKNAVVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.52|      15|      25|      56|      70|       6
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   56-   70 (25.63/17.04)	DAA.KNQVAMNPINTV
   83-   98 (22.89/14.47)	DASvKEDMKLWPFKVV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15968 with Med37 domain of Kingdom Viridiplantae
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