<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15961

Description Mediator of RNA polymerase II transcription subunit 33B (Fragment)
SequenceMETATVNSIQYDRVKELTKLAQERNIDPLIWSMQLSSMLSSAGISLPSIEVGEILVSHICWCNNVPNAWKLLEKALMVRIVPPLFVLALLSTRVIPARRSYPMGYRLYMELLKRYAFSLPSLVNGPNYRKIMESINHTLHLSQIFELQGSESGKHVIEYVFTVVWQLLDASLDDEGLLALTVEKKSMWPVATQEMEISNHDDLAGKRVEHREGLCRMNTVLAIEIIGELFGDKLTSMILYLARRNMPTHWDSFMQHLQLLVSNSSALRNSEIICPEALILLISKNRGVRSRECITSSRKFLHAVMASGSLVFSASRGDDASASVLWLPIDLFLEDTMDGTQVAATSAADTLAGLVKALQAVNFTSWRNTFFGLWISALRLVNRERDPSEGPVPRLDTCLCLLLSITPLAITNIIKEGENEGSSSDQRTEATGERRQALVSSLQQLYDYEGLLNPPLPAIPLANQATLKAMMFLSGISGGNEYFDGMRLNDIPVNCAGNLWHLIVEACIARNILDTSAYLWPGYVKGQCNQVPRNMSGPSPSWSSLMKGSLLTPPMVSVLVSTPASSLAEIEKIYEIAVNGPAEDKISAATILCGASLARGWNIQEHTILFIIRLLSPCVPSDYCGTDSHLIGYAPFLNVLLVGISSVDCIQIFSLHGLVPQLVGALIPICEAFGSCPPNVSWTLMSEEITSHAVFSNAFTLLLTLFRFDQPPLEHLTRDVPMGSHLTPEFLLLVRNSQLVFSEDLLKDQSKSKQLSRVLSQLPREPIVMDSFPKLKYWYRQHQACIASPLSGLVPGSPVHQIVEALLNFMFRKINKAGQSLKPPTSSGSNSSGSGNEEISPHLKLPAWDILEAVPFVLNAALTACAHGVLSPRELATGLKDLADFLPASLATITSYFSAEVSRGIWNPASMNGTDWPSPAANLATVEQQIKKILAATGVDVPSLSVGGSSPAVLPLPLAILV
Length962
PositionTail
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.153
Instability index46.24
Isoelectric point5.85
Molecular weight105354.74
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15961
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     349.22|      95|      98|     451|     548|       1
---------------------------------------------------------------------------
   28-   91 (53.68/27.99)	.............PLIWSMQLSSMLSSAGISLP.....SIEVGEILVshicWCNnvPNA...WKLLEKALMVRIVppLFVLALLS............................
  451-  548 (160.97/111.44)	LLNPPLPAI....PLANQATLKAMMFLSGISGGNEyfDGMRLNDIPV....NCA..GNL...WHLIVEACIARNI..LDTSAYLWPGYVKGQCNqVPRNMSGPSPSWSSLMKG
  550-  643 (134.57/82.84)	LLTPPMVSVlvstPASSLAEIEKIYEIA.VNGPAE..D..KISAATI....LCG..ASLargWN.IQE....HTI..LFIIRLLSPCVPSDYCG.TDSHLIGYAPFLNVLLVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.93|      17|      20|     257|     273|       2
---------------------------------------------------------------------------
  257-  273 (26.95/15.87)	LQLLVSNSSALRNSEII
  278-  294 (28.99/17.60)	LILLISKNRGVRSRECI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.92|      34|     452|     213|     247|       3
---------------------------------------------------------------------------
  213-  247 (56.19/40.43)	GLCRMN...TVLAIEIIGE.LFGDKLTsMILYLARRNMP
  674-  711 (52.72/33.13)	GSCPPNvswTLMSEEITSHaVFSNAFT.LLLTLFRFDQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.35|      22|     584|     300|     328|       4
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  300-  328 (35.82/30.91)	FLHAVMASGSLVFSA..SRGddasasvLWLP
  885-  908 (38.54/19.94)	FLPASLATITSYFSAevSRG.......IWNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.75|      11|     133|     649|     660|       5
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  649-  660 (18.52/16.37)	CIqIFSLHGLVP
  785-  795 (22.24/13.89)	CI.ASPLSGLVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15961 with Med33 domain of Kingdom Viridiplantae
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