<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15959

Description Pre-mRNA-processing protein 40B
SequenceMMGCRPIDTPLDPNAKLLPGQGEPLSDPERYRRLVGKLNYLTVTRPDILSSPGKGLLFEDRGHEHIIGYTDADWAGSLSDRLSTSGYCVLVRGNLVSWKSKKQSVVVRSSTEAEYRAMAVATCELVWIKQLLRELKFGGTGKMELECDNQAALHIASNPRADASTVWKEFTTADGRKYYYNKETKQSKWTIPDELKLARELAETAGQVVQTGTSTNPGVQVSEAVTPTEQPSAVTLVSSTPSSTVSGVASSPVPVTPALSDVSTPPLVASGSSAFPTVSPAVTSSAGVSSPAALGSAVSAALANAYLTQMSGIGNVSPQVASSLSGASSQDIEEAKKVMAVSGKINVVPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRIIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKDEFTKMLEESKELTSSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVDTQWRKVQDLLEDDERCLRLEKLDRLEIFQEYIRDLEKEDEEPRKLQKEQLRRAERKNRDAFRKMMEEHIAVGMLTAKTSWRHYCQMVKEYVAYQAVASNTSGSTPKDLFEDAAEELEKQYHEDKIRVKDVVKSEKITISSTGTFDDFKVAILEGIGSPSINDVNLQIKHSKLVMFGSVLGCTISVWEIEVLGP
Length713
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.544
Instability index43.74
Isoelectric point5.87
Molecular weight79837.35
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15959
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     339.71|      65|      65|     365|     429|       1
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  365-  429 (103.96/74.19)	KQ....EAKN..AF.KALLE........SAN.VESDWTWEQTMRIIINDKRYGAL..KTLGER.KQAFNEYLM.....QRKKQEAEERR
  432-  502 (90.90/63.83)	QR....KAKD..EFtKMLEE........SKE.LTSSTRWSKAVTMFEDDERFKAV..EREADR.EDLFRNYLVdlqkkERSKAQEEYRR
  504-  564 (83.04/57.60)	........RL..EY.KQFLE........TCGfIKVDTQWRKVQDLLEDDERCLRL..EKL.DR.LEIFQEYIR.....DLEKEDEEPRK
  568-  644 (61.81/40.77)	EQlrraERKNrdAF.RKMMEehiavgmlTAK.T....SWRHYCQMVKEYVAYQAVasNTSGSTpKDLFEDAAE.....ELEKQYHEDK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.68|      22|      22|     237|     258|       2
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  237-  258 (37.36/26.15)	VSSTPSSTVSGVASSPVPVTPA
  262-  281 (32.79/21.93)	V.STPPLVASGSSAFP.TVSPA
  316-  332 (18.53/ 8.78)	VSPQVASSLSGASSQDI.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.07|      28|      30|      33|      62|       3
---------------------------------------------------------------------------
   33-   62 (42.81/27.13)	RLVGKLNY.LTVTRPDILSSPGKGLLFedRG
   65-   93 (44.27/22.61)	HIIGYTDAdWAGSLSDRLSTSGYCVLV..RG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15959 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AETAGQVVQTGTSTNPGVQVSEAVTPTEQPSAVTLVSSTP
202
241










Molecular Recognition Features






MoRF SequenceStartStop




NANANA