<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15959

Description Pre-mRNA-processing protein 40B
SequenceMMGCRPIDTPLDPNAKLLPGQGEPLSDPERYRRLVGKLNYLTVTRPDILSSPGKGLLFEDRGHEHIIGYTDADWAGSLSDRLSTSGYCVLVRGNLVSWKSKKQSVVVRSSTEAEYRAMAVATCELVWIKQLLRELKFGGTGKMELECDNQAALHIASNPRADASTVWKEFTTADGRKYYYNKETKQSKWTIPDELKLARELAETAGQVVQTGTSTNPGVQVSEAVTPTEQPSAVTLVSSTPSSTVSGVASSPVPVTPALSDVSTPPLVASGSSAFPTVSPAVTSSAGVSSPAALGSAVSAALANAYLTQMSGIGNVSPQVASSLSGASSQDIEEAKKVMAVSGKINVVPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRIIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKDEFTKMLEESKELTSSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVDTQWRKVQDLLEDDERCLRLEKLDRLEIFQEYIRDLEKEDEEPRKLQKEQLRRAERKNRDAFRKMMEEHIAVGMLTAKTSWRHYCQMVKEYVAYQAVASNTSGSTPKDLFEDAAEELEKQYHEDKIRVKDVVKSEKITISSTGTFDDFKVAILEGIGSPSINDVNLQIKHSKLVMFGSVLGCTISVWEIEVLGP
Length713
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.544
Instability index43.74
Isoelectric point5.87
Molecular weight79837.35
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15959
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     339.71|      65|      65|     365|     429|       1
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  365-  429 (103.96/74.19)	KQ....EAKN..AF.KALLE........SAN.VESDWTWEQTMRIIINDKRYGAL..KTLGER.KQAFNEYLM.....QRKKQEAEERR
  432-  502 (90.90/63.83)	QR....KAKD..EFtKMLEE........SKE.LTSSTRWSKAVTMFEDDERFKAV..EREADR.EDLFRNYLVdlqkkERSKAQEEYRR
  504-  564 (83.04/57.60)	........RL..EY.KQFLE........TCGfIKVDTQWRKVQDLLEDDERCLRL..EKL.DR.LEIFQEYIR.....DLEKEDEEPRK
  568-  644 (61.81/40.77)	EQlrraERKNrdAF.RKMMEehiavgmlTAK.T....SWRHYCQMVKEYVAYQAVasNTSGSTpKDLFEDAAE.....ELEKQYHEDK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.68|      22|      22|     237|     258|       2
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  237-  258 (37.36/26.15)	VSSTPSSTVSGVASSPVPVTPA
  262-  281 (32.79/21.93)	V.STPPLVASGSSAFP.TVSPA
  316-  332 (18.53/ 8.78)	VSPQVASSLSGASSQDI.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.07|      28|      30|      33|      62|       3
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   33-   62 (42.81/27.13)	RLVGKLNY.LTVTRPDILSSPGKGLLFedRG
   65-   93 (44.27/22.61)	HIIGYTDAdWAGSLSDRLSTSGYCVLV..RG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15959 with Med35 domain of Kingdom Viridiplantae
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