<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15955

Description U-box domain-containing protein 33
SequenceMAMETPSPRVRRSPVRYPEVDLSLLNLTEQIVQEGSSPLTPVRVVDDVMYVAVGKDLKETEPTLTWALHKSGGRKMCILHVHTPAQKIPMMGTKFNIDQLDVHQVRTYHEKERQEMHKILEKYVLICGRAGVRADKLVLEMDSIENGIVELISQHGIGKLVMGAAANKCYSKKMTDLRSKKAIYVRLQAPAFCCLWFVCKGNLIYTRESKSERLFAESVSPSIPASPVNDIVLRSSSVTEGYNEQVQLRGPCTDYHRVASDNQRKIFSGFSSGGTLQANFPSMSSDRSADSWDGIPPISPSVASRLSLSSSVEMANDSLARTEGNETAFDSSALHYFNFGPRQSSPPSIAERVNDELAGSMNDELYDKFEQYVAEAETARREAFEESIKRRKAEKDAIEARRRAKASETVYADELRRRRELEEALAKDKEKADQMKSQLNKLREDLQAAQAQTSSLEGQLLNSDTQVQELEQKIFSAVDLLQKYRKERDELQVERDDALKLAEALREKHSDGSSFKSTSVLFAEFYFHEIEEATRNFDPALKIGEGGYGSIYRGLLRHTQVAIKMLHPHSLQGPSEFQQEVNILSKLRHPNIVTLIGACPEAWTLVYEYLPNGSLEDRLTCKDNTPPLSWQTRIRVATELCCALIFLHSCTARGIIHGDLKPANILLDANFVSKLSDFGICRVLSEDDFSENSTTLCYRTDPKGTFAYVDPEFLETGELTPKSDVYSFGIILLRLLTGRPALGIKNEIQYALDKGNLKNLLDPTAGDWPFVQAKQLAHLAMSCCEKNRRCRPDLPSEVWKVLEPMRASCGASSLKMGSDEPCDIPSYFICPIFQEVMQDPVVAADGFTYEAEALRGWLDSGHETSPMTNLPLSHKNLVPNHALRSAIQEWLQQG
Length894
PositionTail
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.416
Instability index51.98
Isoelectric point5.83
Molecular weight100262.72
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.80|      20|      24|     375|     398|       1
---------------------------------------------------------------------------
  377-  396 (32.10/28.92)	ETARREAFEESIKRRKAEKD
  414-  433 (30.70/16.10)	ELRRRRELEEALAKDKEKAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.86|      22|      24|     115|     138|       2
---------------------------------------------------------------------------
  115-  138 (33.49/35.19)	EMHKILEKYVLICGRAGVraDKLV
  140-  161 (37.37/30.71)	EMDSIENGIVELISQHGI..GKLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.92|      67|      72|     176|     244|       3
---------------------------------------------------------------------------
  176-  244 (111.99/80.57)	DLRSKKAIYVRL....QAPAFCclWFVCKGNLIYTRESKSERLFAESVSPSIPASPVNDIVLRSSSVTEGYNE
  247-  317 (113.93/75.09)	QLRGPCTDYHRVasdnQRKIFS..GFSSGGTLQANFPSMSSDRSADSWDGIPPISPSVASRLSLSSSVEMAND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.39|      32|      57|     441|     472|       4
---------------------------------------------------------------------------
  441-  472 (50.24/32.63)	KLREDLQAAQAQTSSLEG.QLLNSDTQVQELEQ
  500-  532 (48.15/30.98)	KLAEALREKHSDGSSFKStSVLFAEFYFHEIEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15955 with Med32 domain of Kingdom Viridiplantae
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