<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15943

Description Uncharacterized protein
SequenceMANICEKLSKWREYFVSSKTNIFEIIELAIIISAIDHPKEFKLKRDRVAQLLFSCKITRGNGCDKVEFVVPNADNVVRNADKDVQNTVNVDVDEEEPENSSDEEEEESRIIKEVLRNKSIIDDYRNETDLSVYASLRELRKMDLTLETLKATGIGKSVNALRKHKSANIQNLAKKMVENWSEMVNEYWLKAQAAFADTERIPESPKATVAGEEEERLPSMPLEDLSFVLNQATSFTLSRVLDGLDDDGNALSSGQTNNHLEVGRKASNPVSSRQQNVTAAPEANPVRRQQNVTAAPNESNPVRRQQNVTAASKANPVRRQQNITAASKVSNLVSRQQNVTAAPEANPVRRQQNVIAASKVSNPVRRHQNVTAAPEAKPVRRHQNVTAAPNVSNPVRRQQNVTVAPKDKKGDHQKKQTSLAKSNKPPGDNSMPGRPIKPTFQRKLNNDDMKFQHKSDRSKIQTRPVPTQPNKLKRPEEDAEQVKLEAAKRKLQERYQEVERAKRQRMVQVVELRDMHKKEHPKHGPRARNSHMRPANHNRPLVNRRQ
Length546
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.03
Grand average of hydropathy-0.966
Instability index58.33
Isoelectric point9.81
Molecular weight61849.97
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15943
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     231.25|      27|      29|     273|     299|       1
---------------------------------------------------------------------------
  273-  297 (52.77/30.12)	......RQQNVTAAPEANPVRRQQNVTAAPN
  298-  328 (49.73/27.98)	ESnpvrRQQNVTAASKANPVRRQQNITAASK
  329-  359 (52.47/29.91)	VSnlvsRQQNVTAAPEANPVRRQQNVIAASK
  360-  390 (52.74/30.09)	VSnpvrRHQNVTAAPEAKPVRRHQNVTAAPN
  392-  406 (23.54/ 9.58)	................SNPVRRQQNVTVAPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.57|      35|      62|     441|     475|       2
---------------------------------------------------------------------------
  407-  447 (45.97/22.55)	DKKGDHQKKQTSL..AKSNKPPGDNSMPgRPikptfQRKLNND
  448-  487 (50.50/25.49)	DMKFQHKSDRSKI..QTRPVPTQPNKLK.RPeedaeQVKLEAA
  511-  545 (37.11/16.82)	ELRDMHKKEHPKHgpRARNSHMRPANHN.RP...lvNRR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.44|      18|      37|      75|      92|       3
---------------------------------------------------------------------------
   75-   92 (29.40/16.68)	NVVRNAD..KDVQNTVNVDV
  113-  132 (25.04/13.22)	EVLRNKSiiDDYRNETDLSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      13|      14|     190|     202|       6
---------------------------------------------------------------------------
  190-  202 (22.75/16.83)	KAQAAFADTERIP
  206-  218 (22.18/16.20)	KATVAGEEEERLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15943 with Med26 domain of Kingdom Viridiplantae
Unable to open file!