<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15941

Description Putative mediator of RNA polymerase II transcription subunit 37e
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGPADKPMIVVTYKGEEKQFSAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNGLENYAYNMRNTIKDDKISSQLPAADKKKIEDAIDEAIKWLDSNQLAEADEFEDKMKELESVCNPIIAKMYQGGAGGATMDEDDGPTVGGAGSGAGPKIEEVD
Length649
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.408
Instability index33.13
Isoelectric point5.11
Molecular weight71080.76
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15941
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     343.28|     119|     278|     200|     323|       1
---------------------------------------------------------------------------
  200-  323 (179.40/145.91)	NVlIFDL.GGGTFDVSLLTIEEG.IFEVKATAGDTHLGGEDFDnRMVNHfVQEFKRKH...KKDI...SGNPRALRRLRTAC..ERAKRTLSSTAQTTIEiDSLYEGIDFYTT..ITRA.RFEELNMDLFRKCmEPV
  481-  612 (163.88/111.55)	NV.CFDIdANGILNVSAEDKTTGqKNKITITNDKGRLSKEEIE.RMVQE.AEKYKSEDeelKKKVeakNGLENYAYNMRNTIkdDKISSQLPAADKKKIE.DAIDEAIKWLDSnqLAEAdEFEDKMKELESVC.NPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.82|      27|     189|     170|     198|       2
---------------------------------------------------------------------------
  170-  198 (38.07/31.14)	GLNVMRIINePTaAAIAYGLD.KKATSAGE
  362-  389 (42.75/25.66)	GKELCKSIN.PD.EAVAYGAAvQAAILSGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      38|      55|       3
---------------------------------------------------------------------------
   16-   33 (19.07/11.04)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.65/24.39)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.28/16.17)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15941 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGAGGATMDEDDGPTVGGAGSGAGPKIEEVD
619
649










Molecular Recognition Features






MoRF SequenceStartStop




1) PKIEEVD
643
649