<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15937

Description Uncharacterized protein
SequenceMHLTNSMNTYYFPRGARSFTEADSIEQNQSAGATELLLVVFYAHDLSSGCTLQRSGWTRNIDMFSEWLSALPFSGGGFNDALVAEGLAEALMVFSSHNGSQTQQNADGQRHCILVAASKPYLLPTPVNGPVTQILKQRGIIEHTSNVVLADAETVAKAFPRCSVSLSVICPRKLPKLRAIYNAGKRNSQTADPPVDTSKNLNFLVLISEDFSEACAAFSDTEMESLASNQSLVEMDMSSVPPVSRPTATSNPSVMNQQPISAGSIPAALEPLMVTSVSGPAPPRIPTSQVAAVSQSGLPISVFEEMVPDNENTKPTTPIVSVMTQSLGPFTGAAANIVILNGVTSAIPAAPSVLISGQQGVTSMTGFDPFGRTSQIAQTPVTVLTSGQLGVTSMSGFAPCARTDQINQNSIPESLTSMAPSTCGNSNLCISQLLSNIQGGTGAGNQTTPVMSEGNLPRYQIMQSGIGMHPNVPSEMGTGMRSGIGTMMPNPERTQQGQPRILPLGRNNSAEAHMSGNSNPCISPLLSNNHRDIGAGSQTAPVMIENFPRSQMMQSGRGRHQNVPSGMGTGILSGIGTMMPTPRMTRQGQSGILPLGRNNTGEANMSLSHQQTSVTFPLAQSSYVKFWEVKKPLLALTFQETVIRTGKEPTA
Length651
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.05
Grand average of hydropathy-0.169
Instability index49.22
Isoelectric point6.38
Molecular weight68853.32
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15937
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.86|      31|      33|     436|     466|       1
---------------------------------------------------------------------------
  436-  466 (57.62/27.30)	NIQGGTGAGNQTTPVMSEGNLPRYQIMQSGI
  471-  501 (55.41/25.98)	NVPSEMGTGMRSGIGTMMPNPERTQQGQPRI
  528-  556 (49.08/22.20)	NNHRDIGAGSQTAPVMIE.NFPRSQMMQSG.
  576-  592 (22.75/ 6.49)	..............GTMMPTPRMTRQGQSGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     333.56|      86|      89|     218|     306|       2
---------------------------------------------------------------------------
   18-  116 (93.93/38.96)	SFTEADSIEQNQSagatellLVvfyAHDLSSGCTLQRSGWTRNI..DMFSEWlsalPF..........SGG.................GFNDALvaeglaEALM.....VfSSHNGS......QTQQNA....DGQRHCILVA.....
  119-  191 (61.99/25.05)	................................KPYLLPTPVNGPvtQILKQR....GIiehtsnvvlaDAE.................TVAKAF.......PRC.....S.VSLSVICP.RKLP..KLR....AIYNAGKRNS..QTA
  219-  306 (147.49/74.72)	SDTEMESLASNQS.......LV...EMDMSSVPPVSRPTATSNP..SVMNQQ....PI..........SAG.................SIPAAL......EPLM.....V.TSVSGPAP.PRIPTSQVA....AVSQSGLPISvfEEM
  309-  387 (30.15/ 8.33)	..................................DNENTKPTTPivSVMTQ.................SLGpftgaaanivilngvtsAIPAAP......SVLIsgqqgV.TSMTGFDPfGR..TSQIAqtpvTVLTSG.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.74|      14|      90|     502|     515|       3
---------------------------------------------------------------------------
  502-  515 (28.30/16.44)	LPLGRNNSAEAHMS
  593-  606 (28.44/16.55)	LPLGRNNTGEANMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.81|      12|      90|     424|     435|       4
---------------------------------------------------------------------------
  424-  435 (24.59/12.46)	GNSNLCISQLLS
  516-  527 (26.22/13.70)	GNSNPCISPLLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15937 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASNQSLVEMDMSSVPPVSRPTATSNPSVMNQQPIS
2) GTGAGNQTTPVMSEGNLPRYQIMQSGIGMHPNVPSEMGTGMRSGIGTMMPNPERTQQGQPRILPLGRNNSAEAHMSGNSNPCISPLLSNNHRDIGAGSQTAPVMIENFPRSQMMQSGRGRHQNVPSGMGTGILSGIGTMMPTPRMTRQGQSGILPLGRNNTGEANMSLSHQQT
227
440
261
612










Molecular Recognition Features






MoRF SequenceStartStop




NANANA