<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15935

Description Uncharacterized protein
SequenceMPVGPGRNIKSPKSVSSESNITSSDIPNGCIDQVHSQLTFQELDSSVSNSQLLSNGSSNASNRSAVHNRQGYPEATTKNGARTKECDSRNENEWVQQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEKWWAENRARVYELYNKPPIPPLVGPALGAIPSMSLQEFQPILPAQQAQPYGSGSSQQFQPLGHANVAMPQPSQIQFPQPMQQVTGRPVVGRHSMPQGPPIPQDFQRNLPMSNNHMPGSGGPNLPLSSYNQVNADSSASQYQTQINDHRFPSGVQPWMPISNHNVNSVTTMQKTGELAAPLVVPEANYVFDPVETIQSDWIEHTSRKGKKYYYNKVTRTSKWRMPDEVKVMLDLNPIWLAREKDSISHASDFGSIPVVKTSSPCADGSLVSVRGAKSSPIAVSPAANLLTSLASESSSLSGKVSSMMIETVEMKNSSEPSSPAVANSEKIGIAVTLGNSVAPPVSETTSAQDAVVYDDGFSPENREDVKKDAAITEIGGATLSDEKTVELGPLVYESKAEAKSAFKTLLESANIGSDCTWDQAMRAVINDWRYGALKSLGERKQAFNEYLSQKKKLEAEERRVKQKKAREDFRIMLEDCKELSPSSRWSKAISIFEHDERFKAVERAKDREDLFEDYVEELEKKEHAKALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYIRDLESEEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAAGILNAKTNWRDYCIKIKDFAAYLAVSSNTSGSTAKDLFTDVMDELEKQYLDDKSQIKDAVRMAEIGLTSAWTLDDFKVAIAKYISSPPMSDTNLKFVFEELLERAREKEEKEAKKRKRLADEFYEFLHASKEITASSKWEDCKSLFGDRQGASFAFIDLELVTRLQGPLESDN
Length928
PositionUnknown
OrganismCapsicum chinense (Scotch bonnet) (Bonnet pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.694
Instability index49.66
Isoelectric point5.71
Molecular weight104357.89
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15935
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.90|      17|      17|     157|     173|       1
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  157-  173 (32.26/21.01)	PALGAIP..SMSLQEFQPI
  175-  193 (28.88/17.93)	PAQQAQPygSGSSQQFQPL
  195-  209 (24.76/14.19)	HANVAMP..QPSQIQF.P.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     413.02|      65|      65|     606|     670|       2
---------------------------------------------------------------------------
  481-  553 (56.94/32.37)	AQDA..VVYD.DGFS....PENRE..DVKKDaAITEIggatlsdEKTVELGPLvyE...SKAEAKS..A............fktLLES....A..NIGSDCTWDQ
  554-  621 (79.13/48.00)	AMRA..VIND.WRYGALKSLGERK..QAFNE.Y...L.......SQKKKLEAE..ErrvKQKKARE..D............friMLED...CK..ELSPSSRWSK
  622-  689 (96.35/60.14)	AISI..FEHD.ERFKAVERAKDRE..DLFED.YVEEL.......EKKEHAKAL..E...EQKRNRV..E............yleFLKS...CD..FIKASSQWRK
  690-  766 (65.85/38.65)	VQDR..LEAD.ERCSRLEKI.DRL..EIFQE.YIRDL.......ESEE.......E...EQRKLRM..EelrkaerknrdefrkLMEEhvaAG..ILNAKTNWRD
  768-  827 (58.16/33.22)	CIKIkdFAAY.LAVSSNTSGSTAK..DLFTD.VMDEL.......EKQYLDD....K...SQIKDAV..R........................maEIGLTSAWT.
  828-  896 (56.59/32.12)	.LDD..FKVAiAKYISSPPMSDTNlkFVFEE.LLERA.......REKEEKEA........KKRKRLadE............fyeFLHA...SK..EITASSKWED
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.45|      12|      80|      21|      32|       3
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   21-   32 (23.71/16.56)	ITSSDIPNGCID
  104-  115 (21.74/14.55)	ITLTSLPGGVID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.58|      12|      20|     219|     231|       4
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  219-  231 (22.25/18.78)	PVVGRHsMP.QGPP
  241-  253 (22.34/13.19)	PMSNNH.MPgSGGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.18|      15|      84|     367|     393|       5
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  353-  367 (29.15/19.04)	W..RMPDEVKVMLDL.........NP
  369-  394 (16.03/29.69)	WlaREKDSISHASDFgsipvvktsSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.72|      17|      21|     435|     455|       6
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  435-  453 (26.03/23.61)	SSMMIETVEMKNSSEPssP
  458-  474 (27.69/11.48)	SEKIGIAVTLGNSVAP..P
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.19|      17|      22|     287|     303|       7
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  287-  303 (34.44/22.28)	PW.MPISNHNVNSVTTMQ
  311-  328 (24.75/13.97)	PLvVPEANYVFDPVETIQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15935 with Med35 domain of Kingdom Viridiplantae
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