<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15924

Description Uncharacterized protein
SequenceMDPSPSHRGDEWAGIKNHYSSAVDRNYLNENVDYLVIISVYEGEMSEFWILSFSLVLIIARLDITLLLKVIDSLFLPRWMCRLTRRDMVRVLFLILMDLCRRTAGLAHPLPVSHVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDSEDTGVDDNSKLSPSRDLTECSSSENCDVYYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPSGNPSTSQNEKEVWWISRWAYRCPMCDGCWVRVV
Length320
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.09
Grand average of hydropathy-0.224
Instability index51.06
Isoelectric point6.51
Molecular weight36337.16
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15924
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.43|      13|      35|     261|     276|       1
---------------------------------------------------------------------------
  261-  276 (24.70/19.62)	VWKTgleGVW.YKCIRC
  299-  312 (28.73/14.80)	VWWI...SRWaYRCPMC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.98|      28|     104|       3|      33|       2
---------------------------------------------------------------------------
    3-   33 (50.88/32.23)	PSP.SHRGDEWAGIKNHYssaVDRNY..LNENVD
  109-  139 (44.10/21.89)	PLPvSHVGSSNIQVRLHY...IDGNYtvLPEVVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.43|      10|     100|     142|     153|       3
---------------------------------------------------------------------------
  142-  151 (20.49/14.64)	LGPHMQNMPR
  167-  176 (20.94/ 7.17)	LHPPAEEWHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.60|      16|      25|     212|     227|       4
---------------------------------------------------------------------------
  212-  227 (33.86/23.62)	NCDVYYGAH.GLWPRKR
  239-  255 (24.74/15.29)	NTSVGLGAYlGIMGSRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15924 with Med16 domain of Kingdom Viridiplantae
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