<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15923

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMRRMSKFSISNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITVWTQPSQFLVRVANLFHVTQSHTWSLIQIPTEAKNTLGGFFPSVQALVDRVIRVQLIWFEMLVVGIESTNGVKILQLLQSGYQEFLRYATGSVQLHWSQWPPNPNGAPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTSVSNGVPPSLNPPSWDGYAPLAAYLLSSQEYLLQEAKQGKKLTEQHYSDMVTLHCSPVSNFSAYVSPEAAAQSTATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVLHQIFGNPTSSFGGQAPKQTVWVSKVNKYSGVEMGKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGIHVFSGPSFTPVDNYHIDVGSAIAAPAFSSTSCCSASVWHDTNRDCTILKIIRVLPPAVPSNQVKANSANWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVALNSVIDVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIQSALTNPSSLVPEPWQASSETLFGIDPEAMAVEPALVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQNASSPATSQGAQGGTANSTGSTQMQAWVQGAIAKISSTADSVPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRRTQLPCFMGAAQRNADGSMQKPQPSIPGKAEDSISGAKPTPGGQVGAGVKGSEEGPSKRSRIGSGNAGQGYTFEEGAANYSETARNKGNGDFKATRRKI
Length899
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.09
Grand average of hydropathy-0.100
Instability index43.49
Isoelectric point7.04
Molecular weight96637.23
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15923
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.07|      13|      21|     666|     686|       1
---------------------------------------------------------------------------
  669-  681 (26.10/34.36)	HFITRLRRYASFC
  784-  796 (27.97/ 9.91)	HFLHRLCQLLHFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.30|      20|      21|     711|     730|       2
---------------------------------------------------------------------------
  688-  705 (24.08/ 8.26)	..AVTAGT...GGSRSMVTSPTQ
  709-  728 (35.16/14.99)	SPATSQGA...QGGTANSTGSTQ
  729-  749 (21.06/ 6.42)	MQAWVQGAiakISSTADSVPS..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.11|      17|      18|     839|     855|       3
---------------------------------------------------------------------------
  229-  251 (22.91/ 8.92)	GPgngfqaTPKTSVSNGVPPS....LN
  839-  854 (26.38/11.38)	.P......TPGGQVGAGVKGS....EE
  855-  875 (22.82/ 8.85)	GP......SKRSRIGSGNAGQgytfEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.97|      13|      21|      50|      65|       5
---------------------------------------------------------------------------
   28-   40 (22.01/ 6.43)	PTECTVFNVIAD.S
   52-   65 (20.96/19.17)	PTSCPRALLIANfH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.77|      17|      18|     570|     587|       6
---------------------------------------------------------------------------
  570-  587 (27.05/22.65)	TQHRQQYGPSLDrIKCRL
  591-  607 (27.72/17.67)	TNAQEVRAMVLD.MQARL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.24|      13|      21|     450|     462|       9
---------------------------------------------------------------------------
  450-  462 (25.91/15.13)	FSGPSFTPVDNYH
  474-  486 (26.33/15.50)	FSSTSCCSASVWH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.90|      16|      17|     801|     817|      11
---------------------------------------------------------------------------
  801-  817 (26.13/17.30)	RTQlPCFMGAAQRNADG
  821-  836 (28.77/14.81)	KPQ.PSIPGKAEDSISG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.11|      25|     128|     162|     197|      13
---------------------------------------------------------------------------
  171-  197 (42.18/36.92)	PNPNGAPSKWFCTSKGlLGAGPsGIMA
  752-  776 (49.93/17.79)	PNPITGPSTFMPISIN.TGTFP.GTPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15923 with Med16 domain of Kingdom Viridiplantae
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