<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15914

Description Uncharacterized protein
SequenceMLLRDEEEVELSEMEWNDMVNPLISSPASTSWKIHQVWEPDMLYVDYTLLPPSPMEDFTLWNHSWSPPPPPHRQESGMIKGAAKAFDAQLQEDAAGGALLTNDWRFELLPDSRQRIANKIILTLRRHLPVSGDEGLLLLRKIAVRFEEKVYTAATSQSDYLRKISLKMLTMETKSQHPVCAETVPVVDESLHVQLDAKSPPEDPTLHYLQSGEECALPDPQRSVTEHGNLKRKGDAGPSGQNHTICDLGSKQKMDKKMKKTWGIGGSISLNDLKQHFGKKREEAAESLDVSVSTLKRICRENGISRWPSKNIKRERLLLSNLSTNETVSEAGGGRISISTTQTAFASTEVLAKSNQQNNLSLDNEIGTSINHGVLRNDEGNGETRMIQEGDSADQEVLYKPQEFEPGRDSFNPAYSSSDGPTILYPLPQERMPAEDSPDQQGEEIARQIEITDGTSHLEKQCLGRERLGCNTEKEVIVRVEDSSSYDFGSVLELIQDHHADFASFHEVDKDPLISTDDLESNCIKSQSTLVSESEPSLINDARRMKLVFEKLITLPLEDLTNTNQEASMTEALAILSGNLSLFTDEQAKQLLEFKFDFPTIMYSWRDCSQTRIDCRNFLAEFERTNSLLETSTKEEVDLKDRYTQIECKEKEMLAQLEAIQKEKNELTKRRSENFIQNKHLAALAEEQAGRTKEKELQMSIASAKLDKLKSQWASVQSSFN
Length721
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.661
Instability index52.72
Isoelectric point5.00
Molecular weight81319.25
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15914
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.20|      19|      21|     216|     235|       1
---------------------------------------------------------------------------
  203-  218 (27.74/16.42)	DPT.LHYLQSG....EECALP
  219-  238 (29.97/23.37)	DPQ.RSVTEHGNlKRKGDAGP
  239-  255 (17.48/ 7.68)	SGQnHTICDLGS.KQKMD...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.67|      13|      21|     139|     155|       2
---------------------------------------------------------------------------
  139-  155 (16.01/21.20)	LRKIAVrfeeKVYTAAT
  161-  173 (22.66/14.98)	LRKISL....KMLTMET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.23|      11|      44|     385|     396|       3
---------------------------------------------------------------------------
  385-  396 (16.54/12.48)	RMIQEgDSADQE
  431-  441 (22.69/12.10)	RMPAE.DSPDQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15914 with Med15 domain of Kingdom Viridiplantae
Unable to open file!