<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15906

Description Pre-mRNA-processing protein 40C
SequenceMQSSRSQTSVMSSATGEPTTSSSTPNADSTQEVAQGKFIPPPGYSVGQASFSYMNASVPPGSSQQSSSSPVIPSTSGGSSAPLQPPIPGQSANVGSSFSYNISQTDNNFSSGLQFSASTLRPAAPDHSVDVKNVSPAASLQPPPPLVSTGLNSFIPGTAAAAGPLLSGSNLSFNGNPQMAQIDQPMKPLQNRGVDVAQETGGMTSATFVMQSITQAGHMNSGSPATAFPTSHMGSPNMRMPHAPQFLPAGVPRNPVTPGPPGLGPAIPPSSNLTATASPGGPSLPVRPNVPPVHPLANPPVQQQTYSPYLSPTPMAPAHQGPWLQPPPGTTMLRPPFPSYPVGFAVPFPLSATSAPLSSVTWPETRPPGVAPVAAPPGVPTTASQSTHALGLQPELPPGVDSGKHVNDADSKEGASTSEQLETWTAHRTETGAIYYYNSLTGESTYEKPAGFRGEPGKVAAQPTPVSWEKLAGTDWALVATNDGQKFYYNTKTKLSSWQIPGEVTELKKKHEADALQAQPPSTPNVNESTEKGSAPISLSIPAVNTGGRDATTLRHSIVPGSSALDLVKKKLMDSGAPPAVSSPAPASSGVISSELNGSKALESTIGAAQKENIKEKSKEANDNGSLSGSSSDSEDDEGVPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKTLFEHYVKTRADEERKEKRAAQKAAVEGFKQLLEEAKEDINEDTDYQSFKKKWGHDPRFETLDRKEREVLLNERVLQLRKAAQEKAHAVRAAAISQFKSMLREQGDITLNTRWSKVKDSLRNDPRYKSIKHEEREALFNEYLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREEQEVERVRLKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSELEKLFREHVKILYERCAQEFKALLAEVITVEACSRETDGKTVANSWSTAKQLLKGDPRYSKMARKDRESLWRRYVEDIQRRQKSSFDEGDKARSKGSSDSRRR
Length1030
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.715
Instability index52.72
Isoelectric point8.75
Molecular weight111683.59
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15906
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     354.48|      42|      43|       2|      43|       1
---------------------------------------------------------------------------
    2-   40 (55.60/21.48)	..................QSSRS..QTSVM..SS...A..TGEP.......TTSSST......PN......ADSTQE....VAQG..KFIP
   41-   85 (51.47/19.28)	P.PG..........ysvgQASFSymNASV........P..PGSS.......QQSSSS......PV......IPSTSG....GSSA..PLQP
   86-  156 (26.53/ 6.02)	PiPGqsanvgssfsynisQTDNN..FSSGLqfSA...S..TLRP.......AAPDHSvdvknvSP......AASLQPppplVSTGlnSFIP
  157-  183 (31.71/ 8.77)	G.TA.............................A...A..AG.P.......LLSGSN......LS......FNGNPQ....MAQ.....ID
  210-  248 (36.30/11.22)	...M..............QSI.T..QAGHM..NSgspA..TAFP.......TSHMGS......PN...mrmPHAPQ............FLP
  260-  288 (40.69/13.55)	P.PG..................................lgPAIP.........PSSN......LT......ATASPG....GPSL..PVRP
  299-  349 (57.25/22.35)	P.PV..............QQ.QT..YSPYL..SP...T..PMAPahqgpwlQPPPGT..tmlrPP......FPSYPV....GFAV..PF.P
  351-  375 (26.92/ 6.22)	.................................S...A..TSAP.......L.SSVT......WP......ETRPPG....V..A..PVAA
  376-  417 (28.02/ 6.81)	P.PG........vpttasQS..T..HALGL..Q..........P.......ELPPGV......DSgkhvndADSKEG....AST.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     423.37|      66|      66|     707|     772|       2
---------------------------------------------------------------------------
  612-  668 (43.06/21.21)	...............EN..IKEKSKEANDNGSLSGSSSD.......SEDDEG....VPTKEdciiqfKE.MLKERgV..APF.SKWEKE
  706-  772 (111.23/66.99)	RAAQKAAVEGFKQLLEE..AKEDINEDTDYQSFKKKWGH.......DPRFET....LDRKE......REVLLNER.V..LQL.RKAAQE
  775-  839 (96.91/57.38)	HAVRAAAISQFKSMLRE...QGDITLNTRWSKVKDSLRN.......DPRYKS....IKHEE......REALFNEY.L..SEL.KAAEQE
  842-  875 (38.04/17.84)	RIA........K.......AKHD.EED......KLK.ER.......ERALR......KRKE......REEQEVER.V............
  878-  946 (83.09/48.10)	KARRKEAVESYQALLVE..IIKD..PQASWTESKPKLEK.......DPQGRAanphLDQSE......LEKLFREH.V..KILyERCAQE
  948- 1008 (51.03/26.57)	KA...........LLAEviTVEACSRETDGKTVANSWSTakqllkgDPRYSK....MARKD......RESLWRRY.VedIQR.R.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.54|      24|      42|     520|     548|       3
---------------------------------------------------------------------------
  520-  543 (43.70/18.23)	PP..STP.....NVNESTEKGSAPISLSIPA
  578-  608 (31.84/14.56)	PPavSSPapassGVISSELNGSKALESTIGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.06|      20|      49|     419|     438|       7
---------------------------------------------------------------------------
  419-  438 (37.43/22.79)	EQL..ETWTAHRTETGAIYYYN
  444-  459 (20.32/ 9.10)	STY..EKPAGFRGEPGKV....
  469-  490 (30.31/17.10)	EKLagTDWALVATNDGQKFYYN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15906 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APLSSVTWPETRPPGVAPVAAPPGVPTTASQSTHALGLQPELPPGVDSGKHVNDADSKEGASTSEQLETWT
2) ASFSYMNASVPPGSSQQSSSSPVIPSTSGGSSAPLQPPIPGQSANVGSSFSYN
3) IPGEVTELKKKHEADALQAQPPSTPNVNESTEKGSAPISLSIPAVNTGGRDATTLRHSIV
4) LLSGSNLSFNGNPQMAQIDQPMKPLQNRGVDVAQETGGMTSATFVMQSITQAGHMNSGSPATAFPTSHMGSPNMRMPHAPQFLPAGVPRNPVTPGPPGLGPAIPPSSNLTATASPGGPSLPVRPNVPPVHPLANPPVQQQTYSPYLSPTPMAPAHQGPWLQPPPGTTMLRPPFP
5) MQSSRSQTSVMSSATGEPTTSSSTPNADSTQEVAQGKFIPP
6) SGLQFSASTLRPAAPDHSVDVKNVSPAASLQPPPPLVSTGLNSF
7) SKALESTIGAAQKENIKEKSKEANDNGSLSGSSSDSEDDEGVPTKED
355
49
500
165
1
111
599
425
101
559
338
41
154
645










Molecular Recognition Features






MoRF SequenceStartStop




1) LWRRYV
997
1002