<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15897

Description Uncharacterized protein
SequenceMPIGVITVAVTATAAVLAVQVHLLVIAIRRLQELSGRSSGXQGFKRSRTGISESFSQGGAVVNPLTSDYASREVNSSAITGGNDQTGLQWGWDDDDRDVGMDIQALLPEFGDFGDFFENDALPFGEELHESQTLMFPASDSVDVGSSPCPSMMDVQDQLLLPVGFSSFESFNQPPPPSILDDSLSKHQEVIKSAAVDNQVNSTSASIAGEFDHLIKAEALMSFAPKYGAVETPTGELPFDFQESLCYEVPGSGDCTLRHDTGSILQSKKHYTHIESGKEKNNDKLSGYVRSCATRETQVALSPFSAFNSTNSVKGMSRFSRSSSRNHSQGEAVVSGDNLSSKSEMKKKEIIPVRIAGDIDGGLLDGTLNAPVXVRIAGDIDGGLLDGTLNAPVGV
Length395
PositionKinase
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.239
Instability index52.32
Isoelectric point4.66
Molecular weight41839.03
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15897
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.39|      19|      19|     353|     371|       1
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  353-  371 (40.70/23.48)	VRIAGDIDGGLLDGTLNAP
  374-  392 (40.70/23.48)	VRIAGDIDGGLLDGTLNAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.41|      66|     114|      50|     146|       2
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   74-  146 (104.27/87.12)	VNSSAITGGNDQTGLQWGWDDDDRdvgMDIQALL...PEFGDFGDffENDALPFgeELHESQTLMFPAS.DSV...DVGS
  191-  263 (101.14/48.61)	IKSAAVDNQVNSTSASIAGEFDHL...IKAEALMsfaPKYGAVET..PTGELPF..DFQESLCYEVPGSgDCTlrhDTGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.29|      20|     271|      42|      62|       3
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   42-   62 (32.77/24.69)	QGFKR.SRTGiSESFSQGGAVV
  314-  334 (32.52/19.59)	KGMSRfSRSS.SRNHSQGEAVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15897 with Med13 domain of Kingdom Viridiplantae
Unable to open file!