<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15882

Description Uncharacterized protein
SequenceMNAITTIPTPSGESIPVDDLEDSVVKLYTEDKRVKCEEIFIPFKTLCKRRNVETLVLEGNNPATVLLKYVNDSRIKSFVLGSYSSSYFARKLKGSSVPSIILKHAPDCCDVYVVSSTKLMTNSLNPLLAAEGDLRIVNKQQSSASSISAGSIFHNRSSSVASSHLSSTEFVHGNSSNYVNPQRRTNHNLEDVTTGLEAVKGCHSSTYSNQLDIQDEVERLRVELQDTLAMYNQACEDLAHARNKVQLFSSQYLEESEKVNAAKKREENLGKIAAEEKEKHMEAEKEVEIARKLLSEEVYERQIAELKALQQTLEKKKIVDKLLSSDGRYRRFTTEEIEVATDYFSESKMIGEGAYGKVYKGNLDRTPVAIKVLCSDASEKKDEFLKEVEVLSQLHHPHIVLLLGVCPDYGCLVYEYMENGNLGDYILERNNKPFPWFSRFRILFEVACALAFLHNSKPEPIVHRDIKPGNILLDKNFVSKVGDVGLATFISDVVPESVTEYRNSVLAGTFAYMDPEYLRTGTLRPKSDLYAFGVIVLQLLAARRPNGLIMKFEDAINCHSLVDILDNSVTDWPLTEAEELARMALNCCKLRCRDRPDLETEVLPLLKRLAEFADMHSNVEKNLIQAPSPYLCPILQEVMEDPQIAADGFTYEHRAIKLWLDRYSASPVTKQIMQHKLIMPNHTLRLAIQEWRSHSTSFR
Length699
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.325
Instability index47.18
Isoelectric point5.89
Molecular weight79044.28
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15882
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.34|      33|     107|     313|     372|       1
---------------------------------------------------------------------------
  313-  346 (50.34/69.61)	LEKKKIVdKLLSSDGRYRRFTTEEIEVAT..DYFSE
  394-  428 (58.00/24.82)	LHHPHIV.LLLGVCPDYGCLVYEYMENGNlgDYILE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      16|      20|     138|     157|       2
---------------------------------------------------------------------------
  142-  157 (27.77/29.42)	SSASS.ISAGSIFHNRS
  159-  175 (23.05/10.46)	SVASShLSSTEFVHGNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.36|      20|      20|     257|     276|       3
---------------------------------------------------------------------------
  257-  276 (31.32/21.94)	EKVNAAKKREENLGKIAAEE
  278-  297 (32.04/22.61)	EKHMEAEKEVEIARKLLSEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.04|      17|      20|      42|      59|       4
---------------------------------------------------------------------------
   42-   59 (26.24/22.22)	PFKTLCKRRN...VETLVLeG
   62-   81 (23.80/14.59)	PATVLLKYVNdsrIKSFVL.G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15882 with Med32 domain of Kingdom Viridiplantae
Unable to open file!